Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31260 and AZOBR_RS31265 are separated by 17 nucleotides AZOBR_RS31265 and AZOBR_RS31270 are separated by 264 nucleotides
AZOBR_RS31260: AZOBR_RS31260 - dihydroxy-acid dehydratase, at 378,250 to 380,076
_RS31260
AZOBR_RS31265: AZOBR_RS31265 - lysophospholipase, at 380,094 to 381,314
_RS31265
AZOBR_RS31270: AZOBR_RS31270 - aldose 1-epimerase, at 381,579 to 382,652
_RS31270
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 379.234 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.504 kb on + strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.505 kb on - strand, within AZOBR_RS31260 at 379.573 kb on + strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.574 kb on - strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.615 kb on + strand, within AZOBR_RS31260 at 379.616 kb on - strand, within AZOBR_RS31260 at 380.029 kb on + strand at 380.030 kb on - strand at 380.350 kb on + strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.351 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.738 kb on - strand, within AZOBR_RS31265 at 380.783 kb on - strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.818 kb on + strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 380.819 kb on - strand, within AZOBR_RS31265 at 381.040 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.085 kb on + strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.086 kb on - strand, within AZOBR_RS31265 at 381.175 kb on + strand, within AZOBR_RS31265 at 381.176 kb on - strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.178 kb on + strand, within AZOBR_RS31265 at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.256 kb on + strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.257 kb on - strand at 381.589 kb on - strand at 381.693 kb on + strand, within AZOBR_RS31270 at 381.694 kb on - strand, within AZOBR_RS31270 at 381.763 kb on - strand, within AZOBR_RS31270 at 381.822 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.981 kb on + strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270 at 381.982 kb on - strand, within AZOBR_RS31270
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 379,234 + AZOBR_RS31260 0.54 +1.2 379,504 + AZOBR_RS31260 0.69 -2.5 379,504 + AZOBR_RS31260 0.69 -0.3 379,505 - AZOBR_RS31260 0.69 -0.2 379,505 - AZOBR_RS31260 0.69 +0.3 379,505 - AZOBR_RS31260 0.69 -0.2 379,505 - AZOBR_RS31260 0.69 +0.7 379,573 + AZOBR_RS31260 0.72 -0.4 379,574 - AZOBR_RS31260 0.72 -1.7 379,574 - AZOBR_RS31260 0.72 -0.6 379,615 + AZOBR_RS31260 0.75 -1.0 379,615 + AZOBR_RS31260 0.75 -0.6 379,615 + AZOBR_RS31260 0.75 -0.6 379,616 - AZOBR_RS31260 0.75 -1.9 380,029 + -1.0 380,030 - +1.6 380,350 + AZOBR_RS31265 0.21 +0.1 380,351 - AZOBR_RS31265 0.21 +0.3 380,351 - AZOBR_RS31265 0.21 +0.4 380,738 - AZOBR_RS31265 0.53 -2.4 380,738 - AZOBR_RS31265 0.53 -1.2 380,783 - AZOBR_RS31265 0.56 -1.6 380,818 + AZOBR_RS31265 0.59 +0.9 380,818 + AZOBR_RS31265 0.59 -1.2 380,818 + AZOBR_RS31265 0.59 -3.7 380,818 + AZOBR_RS31265 0.59 +1.8 380,818 + AZOBR_RS31265 0.59 +0.9 380,819 - AZOBR_RS31265 0.59 -0.3 380,819 - AZOBR_RS31265 0.59 -0.3 380,819 - AZOBR_RS31265 0.59 +0.9 381,040 + AZOBR_RS31265 0.77 +1.5 381,085 + AZOBR_RS31265 0.81 -0.1 381,085 + AZOBR_RS31265 0.81 +0.5 381,086 - AZOBR_RS31265 0.81 +0.6 381,086 - AZOBR_RS31265 0.81 -1.2 381,175 + AZOBR_RS31265 0.89 +1.0 381,176 - AZOBR_RS31265 0.89 -0.5 381,178 + AZOBR_RS31265 0.89 -0.3 381,178 + AZOBR_RS31265 0.89 -1.4 381,256 + +0.2 381,256 + +1.3 381,256 + -0.1 381,256 + +0.3 381,256 + -1.5 381,256 + -2.2 381,257 - -2.2 381,257 - -0.8 381,257 - +0.3 381,257 - -0.8 381,257 - +0.2 381,589 - +1.5 381,693 + AZOBR_RS31270 0.11 -1.1 381,694 - AZOBR_RS31270 0.11 -0.7 381,763 - AZOBR_RS31270 0.17 -0.2 381,822 + AZOBR_RS31270 0.23 +1.2 381,981 + AZOBR_RS31270 0.37 +1.1 381,981 + AZOBR_RS31270 0.37 +0.1 381,981 + AZOBR_RS31270 0.37 +0.1 381,982 - AZOBR_RS31270 0.38 -0.5 381,982 - AZOBR_RS31270 0.38 +2.4 381,982 - AZOBR_RS31270 0.38 +0.3 381,982 - AZOBR_RS31270 0.38 +0.1
Or see this region's nucleotide sequence