Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29580 and AZOBR_RS29585 are separated by 920 nucleotides AZOBR_RS29585 and AZOBR_RS29590 are separated by 30 nucleotides AZOBR_RS29590 and AZOBR_RS29595 overlap by 11 nucleotides
AZOBR_RS29580: AZOBR_RS29580 - hypothetical protein, at 766,187 to 767,638
_RS29580
AZOBR_RS29585: AZOBR_RS29585 - hypothetical protein, at 768,559 to 768,846
_RS29585
AZOBR_RS29590: AZOBR_RS29590 - hypothetical protein, at 768,877 to 769,620
_RS29590
AZOBR_RS29595: AZOBR_RS29595 - hypothetical protein, at 769,610 to 770,242
_RS29595
Position (kb) 768
769 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.565 kb on - strand at 767.565 kb on - strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.677 kb on - strand at 767.677 kb on - strand at 767.677 kb on - strand at 768.018 kb on - strand at 768.018 kb on - strand at 768.099 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.296 kb on + strand at 768.297 kb on - strand at 768.297 kb on - strand at 768.813 kb on + strand, within AZOBR_RS29585 at 768.814 kb on - strand, within AZOBR_RS29585 at 768.847 kb on + strand at 768.847 kb on + strand at 768.878 kb on + strand at 769.038 kb on + strand, within AZOBR_RS29590 at 769.038 kb on + strand, within AZOBR_RS29590 at 769.039 kb on - strand, within AZOBR_RS29590 at 769.072 kb on - strand, within AZOBR_RS29590 at 769.087 kb on + strand, within AZOBR_RS29590 at 769.087 kb on + strand, within AZOBR_RS29590 at 769.088 kb on - strand, within AZOBR_RS29590 at 769.088 kb on - strand, within AZOBR_RS29590 at 769.158 kb on - strand, within AZOBR_RS29590 at 769.158 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.643 kb on - strand at 769.707 kb on + strand, within AZOBR_RS29595 at 769.707 kb on + strand, within AZOBR_RS29595 at 769.707 kb on + strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.722 kb on + strand, within AZOBR_RS29595 at 769.722 kb on + strand, within AZOBR_RS29595 at 769.723 kb on - strand, within AZOBR_RS29595 at 769.723 kb on - strand, within AZOBR_RS29595
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 767,564 + +0.4 767,564 + -0.3 767,564 + -0.3 767,564 + -1.0 767,564 + -3.5 767,565 - -0.7 767,565 - -0.0 767,676 + -2.3 767,676 + -1.5 767,676 + -0.6 767,677 - +1.0 767,677 - -0.0 767,677 - +0.2 768,018 - -1.1 768,018 - -3.0 768,099 + -3.2 768,146 + +0.1 768,146 + -2.8 768,146 + -1.3 768,146 + -4.0 768,147 - +0.6 768,147 - +0.5 768,147 - +1.0 768,296 + -1.0 768,297 - -1.7 768,297 - -4.0 768,813 + AZOBR_RS29585 0.88 -1.2 768,814 - AZOBR_RS29585 0.89 -3.0 768,847 + +1.5 768,847 + +0.6 768,878 + +2.0 769,038 + AZOBR_RS29590 0.22 -1.7 769,038 + AZOBR_RS29590 0.22 +1.5 769,039 - AZOBR_RS29590 0.22 -0.2 769,072 - AZOBR_RS29590 0.26 -1.0 769,087 + AZOBR_RS29590 0.28 -1.9 769,087 + AZOBR_RS29590 0.28 +2.0 769,088 - AZOBR_RS29590 0.28 -1.3 769,088 - AZOBR_RS29590 0.28 -2.8 769,158 - AZOBR_RS29590 0.38 +0.5 769,158 - AZOBR_RS29590 0.38 -0.5 769,251 - AZOBR_RS29590 0.50 +1.1 769,251 - AZOBR_RS29590 0.50 +0.4 769,251 - AZOBR_RS29590 0.50 -1.3 769,643 - +1.9 769,707 + AZOBR_RS29595 0.15 +1.0 769,707 + AZOBR_RS29595 0.15 -1.0 769,707 + AZOBR_RS29595 0.15 -2.6 769,708 - AZOBR_RS29595 0.15 -1.0 769,708 - AZOBR_RS29595 0.15 +0.2 769,708 - AZOBR_RS29595 0.15 -0.4 769,708 - AZOBR_RS29595 0.15 +0.0 769,708 - AZOBR_RS29595 0.15 -0.5 769,722 + AZOBR_RS29595 0.18 +1.4 769,722 + AZOBR_RS29595 0.18 -0.0 769,723 - AZOBR_RS29595 0.18 -0.2 769,723 - AZOBR_RS29595 0.18 -0.5
Or see this region's nucleotide sequence