Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28040 and AZOBR_RS28045 overlap by 4 nucleotides AZOBR_RS28045 and AZOBR_RS28050 overlap by 4 nucleotides AZOBR_RS28050 and AZOBR_RS28055 overlap by 4 nucleotides AZOBR_RS28055 and AZOBR_RS28060 overlap by 4 nucleotides
AZOBR_RS28040: AZOBR_RS28040 - ABC transporter substrate-binding protein, at 460,555 to 461,418
_RS28040
AZOBR_RS28045: AZOBR_RS28045 - zinc ABC transporter permease, at 461,415 to 462,305
_RS28045
AZOBR_RS28050: AZOBR_RS28050 - manganese ABC transporter ATP-binding protein, at 462,302 to 463,030
_RS28050
AZOBR_RS28055: AZOBR_RS28055 - ABC transporter substrate-binding protein, at 463,027 to 463,947
_RS28055
AZOBR_RS28060: AZOBR_RS28060 - hypothetical protein, at 463,944 to 464,495
_RS28060
Position (kb) 462
463
464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 461.713 kb on + strand, within AZOBR_RS28045 at 461.713 kb on + strand, within AZOBR_RS28045 at 461.713 kb on + strand, within AZOBR_RS28045 at 461.714 kb on - strand, within AZOBR_RS28045 at 461.714 kb on - strand, within AZOBR_RS28045 at 462.010 kb on + strand, within AZOBR_RS28045 at 462.010 kb on + strand, within AZOBR_RS28045 at 462.041 kb on - strand, within AZOBR_RS28045 at 462.059 kb on - strand, within AZOBR_RS28045 at 462.059 kb on - strand, within AZOBR_RS28045 at 463.136 kb on + strand, within AZOBR_RS28055 at 463.175 kb on + strand, within AZOBR_RS28055 at 463.175 kb on + strand, within AZOBR_RS28055 at 463.176 kb on - strand, within AZOBR_RS28055 at 463.328 kb on + strand, within AZOBR_RS28055 at 463.328 kb on + strand, within AZOBR_RS28055 at 463.334 kb on + strand, within AZOBR_RS28055 at 463.335 kb on - strand, within AZOBR_RS28055 at 463.431 kb on - strand, within AZOBR_RS28055 at 463.451 kb on + strand, within AZOBR_RS28055 at 463.818 kb on - strand, within AZOBR_RS28055 at 463.824 kb on - strand, within AZOBR_RS28055 at 463.824 kb on - strand, within AZOBR_RS28055
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 461,713 + AZOBR_RS28045 0.33 -0.6 461,713 + AZOBR_RS28045 0.33 -0.0 461,713 + AZOBR_RS28045 0.33 +4.0 461,714 - AZOBR_RS28045 0.34 +0.8 461,714 - AZOBR_RS28045 0.34 +0.3 462,010 + AZOBR_RS28045 0.67 -1.5 462,010 + AZOBR_RS28045 0.67 +1.2 462,041 - AZOBR_RS28045 0.70 -1.3 462,059 - AZOBR_RS28045 0.72 -3.0 462,059 - AZOBR_RS28045 0.72 -0.6 463,136 + AZOBR_RS28055 0.12 +0.1 463,175 + AZOBR_RS28055 0.16 +1.8 463,175 + AZOBR_RS28055 0.16 -0.3 463,176 - AZOBR_RS28055 0.16 +0.3 463,328 + AZOBR_RS28055 0.33 -0.2 463,328 + AZOBR_RS28055 0.33 +3.0 463,334 + AZOBR_RS28055 0.33 +0.3 463,335 - AZOBR_RS28055 0.33 +0.3 463,431 - AZOBR_RS28055 0.44 +1.3 463,451 + AZOBR_RS28055 0.46 +0.3 463,818 - AZOBR_RS28055 0.86 -0.4 463,824 - AZOBR_RS28055 0.87 -3.8 463,824 - AZOBR_RS28055 0.87 +0.5
Or see this region's nucleotide sequence