Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26955

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26950 and AZOBR_RS26955 are separated by 30 nucleotidesAZOBR_RS26955 and AZOBR_RS26960 are separated by 260 nucleotides AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626 _RS26950 AZOBR_RS26955: AZOBR_RS26955 - two-component response regulator, at 193,657 to 194,043 _RS26955 AZOBR_RS26960: AZOBR_RS26960 - hypothetical protein, at 194,304 to 196,016 _RS26960 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2at 192.746 kb on + strandat 192.747 kb on - strandat 193.088 kb on + strand, within AZOBR_RS26950at 193.194 kb on - strand, within AZOBR_RS26950at 193.250 kb on + strand, within AZOBR_RS26950at 193.268 kb on + strand, within AZOBR_RS26950at 193.269 kb on - strand, within AZOBR_RS26950at 194.106 kb on + strandat 194.107 kb on - strandat 194.186 kb on - strandat 194.186 kb on - strandat 194.421 kb on + strandat 194.568 kb on + strand, within AZOBR_RS26960at 194.568 kb on + strand, within AZOBR_RS26960at 194.568 kb on + strand, within AZOBR_RS26960at 194.595 kb on - strand, within AZOBR_RS26960at 194.638 kb on - strand, within AZOBR_RS26960at 194.638 kb on - strand, within AZOBR_RS26960at 194.694 kb on + strand, within AZOBR_RS26960at 194.694 kb on + strand, within AZOBR_RS26960at 194.695 kb on - strand, within AZOBR_RS26960at 194.695 kb on - strand, within AZOBR_RS26960at 194.882 kb on - strand, within AZOBR_RS26960at 194.882 kb on - strand, within AZOBR_RS26960

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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192,746 + -0.3
192,747 - +1.0
193,088 + AZOBR_RS26950 0.18 +0.0
193,194 - AZOBR_RS26950 0.34 -1.9
193,250 + AZOBR_RS26950 0.43 -2.6
193,268 + AZOBR_RS26950 0.46 +0.4
193,269 - AZOBR_RS26950 0.46 -1.0
194,106 + -0.9
194,107 - +0.7
194,186 - +1.7
194,186 - +0.0
194,421 + -2.0
194,568 + AZOBR_RS26960 0.15 +0.4
194,568 + AZOBR_RS26960 0.15 +2.7
194,568 + AZOBR_RS26960 0.15 -0.2
194,595 - AZOBR_RS26960 0.17 +1.0
194,638 - AZOBR_RS26960 0.19 +1.2
194,638 - AZOBR_RS26960 0.19 -0.4
194,694 + AZOBR_RS26960 0.23 -0.2
194,694 + AZOBR_RS26960 0.23 +2.0
194,695 - AZOBR_RS26960 0.23 -0.9
194,695 - AZOBR_RS26960 0.23 +1.0
194,882 - AZOBR_RS26960 0.34 +1.1
194,882 - AZOBR_RS26960 0.34 -1.7

Or see this region's nucleotide sequence