Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26590

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26585 and AZOBR_RS26590 are separated by 121 nucleotidesAZOBR_RS26590 and AZOBR_RS26595 are separated by 110 nucleotides AZOBR_RS26585: AZOBR_RS26585 - AraC family transcriptional regulator, at 108,753 to 109,709 _RS26585 AZOBR_RS26590: AZOBR_RS26590 - AraC family transcriptional regulator, at 109,831 to 110,640 _RS26590 AZOBR_RS26595: AZOBR_RS26595 - membrane protein, at 110,751 to 112,298 _RS26595 Position (kb) 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 109.073 kb on - strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.159 kb on + strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.160 kb on - strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.609 kb on + strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.610 kb on - strand, within AZOBR_RS26585at 109.688 kb on - strandat 109.688 kb on - strandat 109.774 kb on + strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.775 kb on - strandat 109.895 kb on - strandat 110.197 kb on + strand, within AZOBR_RS26590at 110.198 kb on - strand, within AZOBR_RS26590at 110.294 kb on - strand, within AZOBR_RS26590at 110.554 kb on + strand, within AZOBR_RS26590at 110.555 kb on - strand, within AZOBR_RS26590at 111.226 kb on + strand, within AZOBR_RS26595at 111.226 kb on + strand, within AZOBR_RS26595at 111.227 kb on - strand, within AZOBR_RS26595at 111.227 kb on - strand, within AZOBR_RS26595at 111.407 kb on + strand, within AZOBR_RS26595at 111.408 kb on - strand, within AZOBR_RS26595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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109,073 - AZOBR_RS26585 0.33 -0.8
109,159 + AZOBR_RS26585 0.42 -3.1
109,159 + AZOBR_RS26585 0.42 +0.4
109,159 + AZOBR_RS26585 0.42 +1.6
109,160 - AZOBR_RS26585 0.43 -3.2
109,160 - AZOBR_RS26585 0.43 -0.0
109,160 - AZOBR_RS26585 0.43 +1.1
109,160 - AZOBR_RS26585 0.43 +0.8
109,160 - AZOBR_RS26585 0.43 +0.5
109,160 - AZOBR_RS26585 0.43 +0.2
109,160 - AZOBR_RS26585 0.43 -1.3
109,609 + AZOBR_RS26585 0.89 -1.9
109,609 + AZOBR_RS26585 0.89 +1.8
109,609 + AZOBR_RS26585 0.89 -1.3
109,609 + AZOBR_RS26585 0.89 -1.5
109,610 - AZOBR_RS26585 0.90 +0.1
109,610 - AZOBR_RS26585 0.90 -0.4
109,610 - AZOBR_RS26585 0.90 +0.2
109,610 - AZOBR_RS26585 0.90 -3.6
109,610 - AZOBR_RS26585 0.90 +3.4
109,610 - AZOBR_RS26585 0.90 +1.1
109,610 - AZOBR_RS26585 0.90 -0.1
109,688 - +2.2
109,688 - +1.1
109,774 + -2.3
109,775 - -0.8
109,775 - -1.9
109,775 - +1.0
109,775 - -0.4
109,775 - -0.7
109,775 - -0.4
109,895 - -1.5
110,197 + AZOBR_RS26590 0.45 +1.3
110,198 - AZOBR_RS26590 0.45 -0.6
110,294 - AZOBR_RS26590 0.57 +0.0
110,554 + AZOBR_RS26590 0.89 +1.0
110,555 - AZOBR_RS26590 0.89 -0.1
111,226 + AZOBR_RS26595 0.31 -0.1
111,226 + AZOBR_RS26595 0.31 +2.0
111,227 - AZOBR_RS26595 0.31 -1.9
111,227 - AZOBR_RS26595 0.31 +0.2
111,407 + AZOBR_RS26595 0.42 -0.3
111,408 - AZOBR_RS26595 0.42 -1.2

Or see this region's nucleotide sequence