Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25660 and AZOBR_RS25665 are separated by 175 nucleotides AZOBR_RS25665 and AZOBR_RS25670 are separated by 3 nucleotides AZOBR_RS25670 and AZOBR_RS25675 are separated by 12 nucleotides AZOBR_RS25675 and AZOBR_RS25680 are separated by 129 nucleotides
AZOBR_RS25660: AZOBR_RS25660 - amidohydrolase, at 804,590 to 805,762
_RS25660
AZOBR_RS25665: AZOBR_RS25665 - hypothetical protein, at 805,938 to 806,531
_RS25665
AZOBR_RS25670: AZOBR_RS25670 - long-chain fatty acid--CoA ligase, at 806,535 to 809,945
_RS25670
AZOBR_RS25675: AZOBR_RS25675 - O-methyltransferase, at 809,958 to 810,551
_RS25675
AZOBR_RS25680: AZOBR_RS25680 - hypothetical protein, at 810,681 to 811,502
_RS25680
Position (kb) 806
807
808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 806.073 kb on + strand, within AZOBR_RS25665 at 806.127 kb on + strand, within AZOBR_RS25665 at 806.128 kb on - strand, within AZOBR_RS25665 at 806.128 kb on - strand, within AZOBR_RS25665 at 806.649 kb on + strand at 806.650 kb on - strand at 806.650 kb on - strand at 806.916 kb on + strand, within AZOBR_RS25670 at 806.917 kb on - strand, within AZOBR_RS25670 at 807.591 kb on + strand, within AZOBR_RS25670 at 807.954 kb on - strand, within AZOBR_RS25670 at 808.800 kb on + strand, within AZOBR_RS25670 at 809.122 kb on - strand, within AZOBR_RS25670 at 809.163 kb on + strand, within AZOBR_RS25670 at 809.304 kb on + strand, within AZOBR_RS25670 at 809.305 kb on - strand, within AZOBR_RS25670 at 809.340 kb on + strand, within AZOBR_RS25670 at 809.508 kb on + strand, within AZOBR_RS25670 at 809.509 kb on - strand, within AZOBR_RS25670 at 809.509 kb on - strand, within AZOBR_RS25670 at 809.893 kb on - strand at 810.044 kb on - strand, within AZOBR_RS25675 at 810.502 kb on + strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.743 kb on - strand at 810.743 kb on - strand at 810.751 kb on + strand at 810.802 kb on + strand, within AZOBR_RS25680 at 810.802 kb on + strand, within AZOBR_RS25680
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 806,073 + AZOBR_RS25665 0.23 -0.1 806,127 + AZOBR_RS25665 0.32 -0.5 806,128 - AZOBR_RS25665 0.32 +0.1 806,128 - AZOBR_RS25665 0.32 -2.6 806,649 + +1.1 806,650 - +0.6 806,650 - +0.1 806,916 + AZOBR_RS25670 0.11 -0.7 806,917 - AZOBR_RS25670 0.11 +0.8 807,591 + AZOBR_RS25670 0.31 +1.1 807,954 - AZOBR_RS25670 0.42 -0.1 808,800 + AZOBR_RS25670 0.66 -0.2 809,122 - AZOBR_RS25670 0.76 -0.2 809,163 + AZOBR_RS25670 0.77 +0.5 809,304 + AZOBR_RS25670 0.81 -0.6 809,305 - AZOBR_RS25670 0.81 -0.5 809,340 + AZOBR_RS25670 0.82 +0.0 809,508 + AZOBR_RS25670 0.87 -0.4 809,509 - AZOBR_RS25670 0.87 -0.4 809,509 - AZOBR_RS25670 0.87 +0.0 809,893 - -0.0 810,044 - AZOBR_RS25675 0.14 -1.6 810,502 + -0.0 810,503 - -0.5 810,503 - +0.3 810,503 - +0.3 810,503 - -1.6 810,743 - -2.8 810,743 - -0.1 810,751 + -0.4 810,802 + AZOBR_RS25680 0.15 +0.3 810,802 + AZOBR_RS25680 0.15 -0.1
Or see this region's nucleotide sequence