Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25665

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25660 and AZOBR_RS25665 are separated by 175 nucleotidesAZOBR_RS25665 and AZOBR_RS25670 are separated by 3 nucleotides AZOBR_RS25660: AZOBR_RS25660 - amidohydrolase, at 804,590 to 805,762 _RS25660 AZOBR_RS25665: AZOBR_RS25665 - hypothetical protein, at 805,938 to 806,531 _RS25665 AZOBR_RS25670: AZOBR_RS25670 - long-chain fatty acid--CoA ligase, at 806,535 to 809,945 _RS25670 Position (kb) 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 805.036 kb on + strand, within AZOBR_RS25660at 805.215 kb on + strand, within AZOBR_RS25660at 805.216 kb on - strand, within AZOBR_RS25660at 805.288 kb on - strand, within AZOBR_RS25660at 805.288 kb on - strand, within AZOBR_RS25660at 806.073 kb on + strand, within AZOBR_RS25665at 806.127 kb on + strand, within AZOBR_RS25665at 806.128 kb on - strand, within AZOBR_RS25665at 806.128 kb on - strand, within AZOBR_RS25665at 806.649 kb on + strandat 806.650 kb on - strandat 806.650 kb on - strandat 806.916 kb on + strand, within AZOBR_RS25670at 806.917 kb on - strand, within AZOBR_RS25670

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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805,036 + AZOBR_RS25660 0.38 -1.4
805,215 + AZOBR_RS25660 0.53 +2.5
805,216 - AZOBR_RS25660 0.53 +1.0
805,288 - AZOBR_RS25660 0.60 +0.5
805,288 - AZOBR_RS25660 0.60 +0.5
806,073 + AZOBR_RS25665 0.23 -0.1
806,127 + AZOBR_RS25665 0.32 -0.5
806,128 - AZOBR_RS25665 0.32 +0.1
806,128 - AZOBR_RS25665 0.32 -2.6
806,649 + +1.1
806,650 - +0.6
806,650 - +0.1
806,916 + AZOBR_RS25670 0.11 -0.7
806,917 - AZOBR_RS25670 0.11 +0.8

Or see this region's nucleotide sequence