Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23695

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23695 and AZOBR_RS23700 are separated by 47 nucleotidesAZOBR_RS23700 and AZOBR_RS23705 are separated by 203 nucleotides AZOBR_RS23695: AZOBR_RS23695 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 349,974 to 353,681 _RS23695 AZOBR_RS23700: AZOBR_RS23700 - hypothetical protein, at 353,729 to 353,917 _RS23700 AZOBR_RS23705: AZOBR_RS23705 - beta-lactamase, at 354,121 to 355,170 _RS23705 Position (kb) 349 350 351 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 349.587 kb on + strandat 349.588 kb on + strandat 349.588 kb on - strandat 349.588 kb on - strandat 349.597 kb on - strandat 349.597 kb on - strandat 350.244 kb on + strandat 350.245 kb on - strandat 350.631 kb on + strand, within AZOBR_RS23695at 350.632 kb on - strand, within AZOBR_RS23695at 350.679 kb on + strand, within AZOBR_RS23695at 350.680 kb on - strand, within AZOBR_RS23695at 350.680 kb on - strand, within AZOBR_RS23695at 350.682 kb on + strand, within AZOBR_RS23695at 350.691 kb on + strand, within AZOBR_RS23695at 350.790 kb on + strand, within AZOBR_RS23695at 351.015 kb on + strand, within AZOBR_RS23695at 351.016 kb on - strand, within AZOBR_RS23695at 351.091 kb on - strand, within AZOBR_RS23695at 351.147 kb on + strand, within AZOBR_RS23695at 351.162 kb on + strand, within AZOBR_RS23695at 351.267 kb on + strand, within AZOBR_RS23695at 351.267 kb on + strand, within AZOBR_RS23695at 351.267 kb on + strand, within AZOBR_RS23695at 351.268 kb on - strand, within AZOBR_RS23695at 351.304 kb on - strand, within AZOBR_RS23695at 351.342 kb on + strand, within AZOBR_RS23695at 351.342 kb on + strand, within AZOBR_RS23695at 351.342 kb on + strand, within AZOBR_RS23695at 351.384 kb on + strand, within AZOBR_RS23695at 351.385 kb on - strand, within AZOBR_RS23695at 351.385 kb on - strand, within AZOBR_RS23695at 351.421 kb on - strand, within AZOBR_RS23695at 351.588 kb on + strand, within AZOBR_RS23695at 352.009 kb on - strand, within AZOBR_RS23695at 352.011 kb on + strand, within AZOBR_RS23695at 352.012 kb on - strand, within AZOBR_RS23695at 352.954 kb on - strand, within AZOBR_RS23695at 352.954 kb on - strand, within AZOBR_RS23695at 352.954 kb on - strand, within AZOBR_RS23695at 353.049 kb on + strand, within AZOBR_RS23695at 353.134 kb on - strand, within AZOBR_RS23695at 353.190 kb on + strand, within AZOBR_RS23695at 353.256 kb on + strand, within AZOBR_RS23695at 353.256 kb on + strandat 353.730 kb on + strandat 354.238 kb on + strand, within AZOBR_RS23705at 354.262 kb on + strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.263 kb on - strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.320 kb on + strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.321 kb on - strand, within AZOBR_RS23705at 354.475 kb on + strand, within AZOBR_RS23705at 354.541 kb on + strand, within AZOBR_RS23705at 354.541 kb on + strand, within AZOBR_RS23705at 354.542 kb on - strand, within AZOBR_RS23705at 354.542 kb on - strand, within AZOBR_RS23705at 354.602 kb on - strand, within AZOBR_RS23705

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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349,587 + -0.6
349,588 + +0.1
349,588 - -2.8
349,588 - +0.1
349,597 - -0.8
349,597 - +0.0
350,244 + +1.8
350,245 - -2.4
350,631 + AZOBR_RS23695 0.18 -1.2
350,632 - AZOBR_RS23695 0.18 +1.0
350,679 + AZOBR_RS23695 0.19 +0.3
350,680 - AZOBR_RS23695 0.19 +1.4
350,680 - AZOBR_RS23695 0.19 +0.3
350,682 + AZOBR_RS23695 0.19 -2.5
350,691 + AZOBR_RS23695 0.19 -1.0
350,790 + AZOBR_RS23695 0.22 -1.2
351,015 + AZOBR_RS23695 0.28 -0.3
351,016 - AZOBR_RS23695 0.28 -3.3
351,091 - AZOBR_RS23695 0.30 +2.0
351,147 + AZOBR_RS23695 0.32 +0.3
351,162 + AZOBR_RS23695 0.32 -3.5
351,267 + AZOBR_RS23695 0.35 +0.4
351,267 + AZOBR_RS23695 0.35 -1.0
351,267 + AZOBR_RS23695 0.35 -0.3
351,268 - AZOBR_RS23695 0.35 +1.4
351,304 - AZOBR_RS23695 0.36 +0.7
351,342 + AZOBR_RS23695 0.37 +0.2
351,342 + AZOBR_RS23695 0.37 +1.2
351,342 + AZOBR_RS23695 0.37 +0.5
351,384 + AZOBR_RS23695 0.38 -1.8
351,385 - AZOBR_RS23695 0.38 -1.6
351,385 - AZOBR_RS23695 0.38 -0.1
351,421 - AZOBR_RS23695 0.39 -0.4
351,588 + AZOBR_RS23695 0.44 -2.2
352,009 - AZOBR_RS23695 0.55 +0.9
352,011 + AZOBR_RS23695 0.55 -2.9
352,012 - AZOBR_RS23695 0.55 +1.0
352,954 - AZOBR_RS23695 0.80 +1.0
352,954 - AZOBR_RS23695 0.80 +2.0
352,954 - AZOBR_RS23695 0.80 +0.6
353,049 + AZOBR_RS23695 0.83 -1.3
353,134 - AZOBR_RS23695 0.85 -2.8
353,190 + AZOBR_RS23695 0.87 +0.3
353,256 + AZOBR_RS23695 0.89 +1.0
353,256 + -0.6
353,730 + +0.9
354,238 + AZOBR_RS23705 0.11 -2.9
354,262 + AZOBR_RS23705 0.13 +0.1
354,263 - AZOBR_RS23705 0.14 -0.6
354,263 - AZOBR_RS23705 0.14 -1.5
354,263 - AZOBR_RS23705 0.14 +2.7
354,263 - AZOBR_RS23705 0.14 -0.4
354,320 + AZOBR_RS23705 0.19 +1.8
354,320 + AZOBR_RS23705 0.19 -0.7
354,320 + AZOBR_RS23705 0.19 -0.1
354,320 + AZOBR_RS23705 0.19 -3.0
354,320 + AZOBR_RS23705 0.19 +0.1
354,320 + AZOBR_RS23705 0.19 -0.5
354,321 - AZOBR_RS23705 0.19 +0.8
354,321 - AZOBR_RS23705 0.19 -1.7
354,321 - AZOBR_RS23705 0.19 +0.4
354,475 + AZOBR_RS23705 0.34 -1.7
354,541 + AZOBR_RS23705 0.40 +0.0
354,541 + AZOBR_RS23705 0.40 +0.5
354,542 - AZOBR_RS23705 0.40 +1.0
354,542 - AZOBR_RS23705 0.40 +0.2
354,602 - AZOBR_RS23705 0.46 +0.8

Or see this region's nucleotide sequence