Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23685

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23680 and AZOBR_RS23685 are separated by 787 nucleotides AZOBR_RS23680: AZOBR_RS23680 - hypothetical protein, at 346,621 to 347,577 _RS23680 AZOBR_RS23685: AZOBR_RS23685 - AsnC family transcriptional regulator, at 348,365 to 348,826 _RS23685 Position (kb) 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 347.708 kb on + strandat 347.708 kb on + strandat 347.708 kb on + strandat 347.708 kb on + strandat 347.709 kb on - strandat 347.874 kb on - strandat 347.880 kb on + strandat 348.091 kb on + strandat 348.160 kb on - strandat 348.181 kb on - strandat 348.352 kb on + strandat 348.352 kb on + strandat 348.353 kb on + strandat 348.353 kb on - strandat 348.354 kb on + strandat 348.355 kb on - strandat 348.355 kb on - strandat 348.412 kb on - strand, within AZOBR_RS23685at 348.472 kb on - strand, within AZOBR_RS23685at 348.508 kb on - strand, within AZOBR_RS23685at 348.508 kb on - strand, within AZOBR_RS23685at 348.508 kb on - strand, within AZOBR_RS23685at 348.681 kb on + strand, within AZOBR_RS23685at 348.681 kb on + strand, within AZOBR_RS23685at 348.682 kb on - strand, within AZOBR_RS23685at 349.587 kb on + strandat 349.588 kb on + strandat 349.588 kb on - strandat 349.588 kb on - strandat 349.597 kb on - strandat 349.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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347,708 + +0.7
347,708 + +0.4
347,708 + -0.7
347,708 + -1.5
347,709 - +1.2
347,874 - -0.3
347,880 + -3.3
348,091 + +1.2
348,160 - -0.3
348,181 - -2.2
348,352 + -2.9
348,352 + -0.3
348,353 + -2.4
348,353 - +0.4
348,354 + -1.8
348,355 - +0.4
348,355 - +1.0
348,412 - AZOBR_RS23685 0.10 -0.0
348,472 - AZOBR_RS23685 0.23 +1.8
348,508 - AZOBR_RS23685 0.31 -0.9
348,508 - AZOBR_RS23685 0.31 -2.0
348,508 - AZOBR_RS23685 0.31 +0.0
348,681 + AZOBR_RS23685 0.68 +0.3
348,681 + AZOBR_RS23685 0.68 +0.4
348,682 - AZOBR_RS23685 0.69 +3.0
349,587 + -0.6
349,588 + +0.1
349,588 - -2.8
349,588 - +0.1
349,597 - -0.8
349,597 - +0.0

Or see this region's nucleotide sequence