Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22150

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22145 and AZOBR_RS22150 are separated by 259 nucleotidesAZOBR_RS22150 and AZOBR_RS22155 are separated by 12 nucleotides AZOBR_RS22145: AZOBR_RS22145 - IMP dehydrogenase, at 1,737,328 to 1,740,672 _RS22145 AZOBR_RS22150: AZOBR_RS22150 - hypothetical protein, at 1,740,932 to 1,741,858 _RS22150 AZOBR_RS22155: AZOBR_RS22155 - conserved exported protein of unknown function, at 1,741,871 to 1,742,680 _RS22155 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1740.201 kb on - strand, within AZOBR_RS22145at 1740.284 kb on + strand, within AZOBR_RS22145at 1740.285 kb on - strand, within AZOBR_RS22145at 1740.285 kb on - strand, within AZOBR_RS22145at 1740.323 kb on + strand, within AZOBR_RS22145at 1740.488 kb on + strandat 1740.551 kb on + strandat 1740.551 kb on + strandat 1740.552 kb on - strandat 1740.552 kb on - strandat 1740.629 kb on + strandat 1740.736 kb on + strandat 1740.736 kb on + strandat 1740.737 kb on - strandat 1740.739 kb on + strandat 1740.740 kb on - strandat 1740.740 kb on - strandat 1740.740 kb on - strandat 1740.860 kb on + strandat 1740.861 kb on - strandat 1740.862 kb on + strandat 1740.863 kb on - strandat 1740.863 kb on - strandat 1741.025 kb on + strand, within AZOBR_RS22150at 1741.323 kb on - strand, within AZOBR_RS22150at 1741.572 kb on - strand, within AZOBR_RS22150at 1741.598 kb on + strand, within AZOBR_RS22150at 1741.599 kb on - strandat 1741.645 kb on + strand, within AZOBR_RS22150at 1741.646 kb on - strand, within AZOBR_RS22150at 1741.677 kb on - strand, within AZOBR_RS22150at 1741.857 kb on - strandat 1742.438 kb on + strand, within AZOBR_RS22155at 1742.439 kb on - strand, within AZOBR_RS22155at 1742.439 kb on - strand, within AZOBR_RS22155at 1742.837 kb on - strandat 1742.837 kb on - strandat 1742.858 kb on + strandat 1742.858 kb on + strandat 1742.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,740,201 - AZOBR_RS22145 0.86 -0.4
1,740,284 + AZOBR_RS22145 0.88 +0.0
1,740,285 - AZOBR_RS22145 0.88 -1.3
1,740,285 - AZOBR_RS22145 0.88 +0.7
1,740,323 + AZOBR_RS22145 0.90 -0.6
1,740,488 + -1.7
1,740,551 + +0.3
1,740,551 + +0.3
1,740,552 - +1.0
1,740,552 - -0.5
1,740,629 + -0.5
1,740,736 + +0.7
1,740,736 + +2.3
1,740,737 - +0.2
1,740,739 + +2.7
1,740,740 - -1.2
1,740,740 - +0.0
1,740,740 - -1.1
1,740,860 + +0.1
1,740,861 - +0.8
1,740,862 + +1.5
1,740,863 - +0.1
1,740,863 - +0.2
1,741,025 + AZOBR_RS22150 0.10 -0.7
1,741,323 - AZOBR_RS22150 0.42 -3.1
1,741,572 - AZOBR_RS22150 0.69 +1.1
1,741,598 + AZOBR_RS22150 0.72 -1.8
1,741,599 - +1.1
1,741,645 + AZOBR_RS22150 0.77 +0.1
1,741,646 - AZOBR_RS22150 0.77 +0.3
1,741,677 - AZOBR_RS22150 0.80 +1.1
1,741,857 - +1.6
1,742,438 + AZOBR_RS22155 0.70 +0.2
1,742,439 - AZOBR_RS22155 0.70 -0.6
1,742,439 - AZOBR_RS22155 0.70 -0.8
1,742,837 - -0.3
1,742,837 - +0.4
1,742,858 + +0.2
1,742,858 + -0.7
1,742,858 + +1.0

Or see this region's nucleotide sequence