Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21750

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21750 and AZOBR_RS21755 are separated by 30 nucleotidesAZOBR_RS21755 and AZOBR_RS21760 are separated by 136 nucleotides AZOBR_RS21750: AZOBR_RS21750 - S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB, at 1,655,809 to 1,656,573 _RS21750 AZOBR_RS21755: AZOBR_RS21755 - acetyltransferase gnat family, at 1,656,604 to 1,657,074 _RS21755 AZOBR_RS21760: AZOBR_RS21760 - peptide ABC transporter substrate-binding protein, at 1,657,211 to 1,658,812 _RS21760 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1654.817 kb on + strandat 1654.818 kb on - strandat 1654.818 kb on - strandat 1654.935 kb on + strandat 1654.936 kb on - strandat 1655.218 kb on - strandat 1655.428 kb on - strandat 1655.429 kb on - strandat 1655.709 kb on + strandat 1655.710 kb on - strandat 1655.867 kb on - strandat 1655.867 kb on - strandat 1655.867 kb on - strandat 1655.867 kb on - strandat 1656.328 kb on + strand, within AZOBR_RS21750at 1656.329 kb on - strand, within AZOBR_RS21750at 1656.766 kb on + strand, within AZOBR_RS21755at 1656.767 kb on - strand, within AZOBR_RS21755at 1656.767 kb on - strand, within AZOBR_RS21755at 1656.877 kb on + strandat 1656.877 kb on + strand, within AZOBR_RS21755at 1657.019 kb on - strand, within AZOBR_RS21755at 1657.298 kb on + strandat 1657.298 kb on + strandat 1657.299 kb on - strandat 1657.380 kb on - strand, within AZOBR_RS21760

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,654,817 + +0.4
1,654,818 - -0.9
1,654,818 - -0.2
1,654,935 + +0.2
1,654,936 - +1.0
1,655,218 - +2.6
1,655,428 - +1.2
1,655,429 - +2.1
1,655,709 + +0.6
1,655,710 - -0.8
1,655,867 - +0.4
1,655,867 - -0.0
1,655,867 - +0.2
1,655,867 - -0.8
1,656,328 + AZOBR_RS21750 0.68 -0.5
1,656,329 - AZOBR_RS21750 0.68 -2.3
1,656,766 + AZOBR_RS21755 0.34 -2.8
1,656,767 - AZOBR_RS21755 0.35 -2.1
1,656,767 - AZOBR_RS21755 0.35 +0.0
1,656,877 + +1.1
1,656,877 + AZOBR_RS21755 0.58 -0.6
1,657,019 - AZOBR_RS21755 0.88 -2.3
1,657,298 + +2.1
1,657,298 + +2.1
1,657,299 - -0.5
1,657,380 - AZOBR_RS21760 0.11 +0.2

Or see this region's nucleotide sequence