Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21740

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21725 and AZOBR_RS21730 are separated by 45 nucleotidesAZOBR_RS21730 and AZOBR_RS21735 overlap by 4 nucleotidesAZOBR_RS21735 and AZOBR_RS21740 are separated by 43 nucleotides AZOBR_RS21725: AZOBR_RS21725 - imidazolonepropionase, at 1,650,274 to 1,651,488 _RS21725 AZOBR_RS21730: AZOBR_RS21730 - hypothetical protein, at 1,651,534 to 1,651,782 _RS21730 AZOBR_RS21735: AZOBR_RS21735 - hypothetical protein, at 1,651,779 to 1,652,204 _RS21735 AZOBR_RS21740: AZOBR_RS21740 - urocanate hydratase, at 1,652,248 to 1,653,936 _RS21740 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1651.418 kb on - strandat 1651.508 kb on + strandat 1651.509 kb on - strandat 1651.796 kb on + strandat 1651.797 kb on - strandat 1651.990 kb on - strand, within AZOBR_RS21735at 1651.990 kb on - strand, within AZOBR_RS21735at 1652.064 kb on + strand, within AZOBR_RS21735at 1652.064 kb on + strand, within AZOBR_RS21735at 1652.404 kb on + strandat 1652.635 kb on + strand, within AZOBR_RS21740at 1652.635 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.665 kb on + strand, within AZOBR_RS21740at 1652.666 kb on - strand, within AZOBR_RS21740at 1652.666 kb on - strand, within AZOBR_RS21740at 1652.698 kb on + strand, within AZOBR_RS21740at 1652.698 kb on + strand, within AZOBR_RS21740at 1652.699 kb on - strand, within AZOBR_RS21740at 1652.699 kb on - strand, within AZOBR_RS21740at 1652.881 kb on + strand, within AZOBR_RS21740at 1653.085 kb on + strand, within AZOBR_RS21740at 1653.385 kb on + strand, within AZOBR_RS21740at 1653.386 kb on - strand, within AZOBR_RS21740at 1653.878 kb on - strandat 1654.079 kb on + strandat 1654.079 kb on + strandat 1654.079 kb on + strandat 1654.080 kb on - strandat 1654.235 kb on + strandat 1654.235 kb on + strandat 1654.235 kb on + strandat 1654.235 kb on + strandat 1654.236 kb on - strandat 1654.236 kb on - strandat 1654.236 kb on - strandat 1654.236 kb on - strandat 1654.535 kb on + strandat 1654.536 kb on - strandat 1654.536 kb on - strandat 1654.580 kb on + strandat 1654.580 kb on + strandat 1654.580 kb on + strandat 1654.580 kb on + strandat 1654.581 kb on - strandat 1654.581 kb on - strandat 1654.817 kb on + strandat 1654.818 kb on - strandat 1654.818 kb on - strandat 1654.935 kb on + strandat 1654.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,651,418 - +0.5
1,651,508 + +1.3
1,651,509 - -2.2
1,651,796 + -0.2
1,651,797 - -1.1
1,651,990 - AZOBR_RS21735 0.50 +0.3
1,651,990 - AZOBR_RS21735 0.50 -3.2
1,652,064 + AZOBR_RS21735 0.67 -0.1
1,652,064 + AZOBR_RS21735 0.67 -1.7
1,652,404 + -0.2
1,652,635 + AZOBR_RS21740 0.23 +1.1
1,652,635 + AZOBR_RS21740 0.23 +0.5
1,652,665 + AZOBR_RS21740 0.25 +1.4
1,652,665 + AZOBR_RS21740 0.25 -0.7
1,652,665 + AZOBR_RS21740 0.25 +0.4
1,652,665 + AZOBR_RS21740 0.25 -0.4
1,652,666 - AZOBR_RS21740 0.25 +0.6
1,652,666 - AZOBR_RS21740 0.25 -0.1
1,652,698 + AZOBR_RS21740 0.27 -0.4
1,652,698 + AZOBR_RS21740 0.27 -0.7
1,652,699 - AZOBR_RS21740 0.27 -2.9
1,652,699 - AZOBR_RS21740 0.27 +1.0
1,652,881 + AZOBR_RS21740 0.37 +0.5
1,653,085 + AZOBR_RS21740 0.50 -0.6
1,653,385 + AZOBR_RS21740 0.67 -2.4
1,653,386 - AZOBR_RS21740 0.67 +0.5
1,653,878 - -0.0
1,654,079 + -0.1
1,654,079 + -0.7
1,654,079 + +3.3
1,654,080 - +0.9
1,654,235 + +0.4
1,654,235 + +0.7
1,654,235 + -2.7
1,654,235 + +0.5
1,654,236 - +0.2
1,654,236 - +0.8
1,654,236 - +0.1
1,654,236 - -1.6
1,654,535 + +1.0
1,654,536 - +0.6
1,654,536 - -1.3
1,654,580 + +1.8
1,654,580 + -2.0
1,654,580 + -1.2
1,654,580 + -1.8
1,654,581 - -2.1
1,654,581 - +0.6
1,654,817 + +0.4
1,654,818 - -0.9
1,654,818 - -0.2
1,654,935 + +0.2
1,654,936 - +1.0

Or see this region's nucleotide sequence