Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21720 and AZOBR_RS21725 are separated by 48 nucleotides AZOBR_RS21725 and AZOBR_RS21730 are separated by 45 nucleotides AZOBR_RS21730 and AZOBR_RS21735 overlap by 4 nucleotides AZOBR_RS21735 and AZOBR_RS21740 are separated by 43 nucleotides
AZOBR_RS21720: AZOBR_RS21720 - hypothetical protein, at 1,649,350 to 1,650,225
_RS21720
AZOBR_RS21725: AZOBR_RS21725 - imidazolonepropionase, at 1,650,274 to 1,651,488
_RS21725
AZOBR_RS21730: AZOBR_RS21730 - hypothetical protein, at 1,651,534 to 1,651,782
_RS21730
AZOBR_RS21735: AZOBR_RS21735 - hypothetical protein, at 1,651,779 to 1,652,204
_RS21735
AZOBR_RS21740: AZOBR_RS21740 - urocanate hydratase, at 1,652,248 to 1,653,936
_RS21740
Position (kb) 1650
1651
1652 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1649.315 kb on + strand at 1649.315 kb on + strand at 1649.315 kb on + strand at 1649.315 kb on + strand at 1649.316 kb on - strand at 1649.348 kb on + strand at 1649.348 kb on + strand at 1649.348 kb on + strand at 1649.348 kb on + strand at 1649.349 kb on - strand at 1649.349 kb on - strand at 1649.349 kb on - strand at 1649.432 kb on + strand at 1649.432 kb on + strand at 1649.432 kb on + strand at 1649.433 kb on - strand at 1649.433 kb on - strand at 1649.433 kb on - strand at 1649.588 kb on + strand, within AZOBR_RS21720 at 1649.589 kb on - strand, within AZOBR_RS21720 at 1649.738 kb on + strand, within AZOBR_RS21720 at 1649.738 kb on + strand, within AZOBR_RS21720 at 1649.738 kb on + strand, within AZOBR_RS21720 at 1649.739 kb on - strand, within AZOBR_RS21720 at 1649.822 kb on + strand, within AZOBR_RS21720 at 1649.822 kb on + strand, within AZOBR_RS21720 at 1649.822 kb on + strand, within AZOBR_RS21720 at 1649.823 kb on - strand, within AZOBR_RS21720 at 1649.823 kb on - strand, within AZOBR_RS21720 at 1650.068 kb on + strand, within AZOBR_RS21720 at 1650.069 kb on - strand, within AZOBR_RS21720 at 1650.158 kb on + strand at 1650.233 kb on + strand at 1650.233 kb on + strand at 1650.233 kb on + strand at 1650.233 kb on + strand at 1650.233 kb on + strand at 1650.233 kb on + strand at 1650.234 kb on - strand at 1650.234 kb on - strand at 1650.234 kb on - strand at 1650.234 kb on - strand at 1650.234 kb on - strand at 1650.536 kb on - strand, within AZOBR_RS21725 at 1650.823 kb on + strand, within AZOBR_RS21725 at 1650.823 kb on + strand, within AZOBR_RS21725 at 1650.824 kb on - strand, within AZOBR_RS21725 at 1650.824 kb on - strand, within AZOBR_RS21725 at 1651.027 kb on + strand, within AZOBR_RS21725 at 1651.028 kb on - strand, within AZOBR_RS21725 at 1651.028 kb on - strand, within AZOBR_RS21725 at 1651.130 kb on - strand, within AZOBR_RS21725 at 1651.418 kb on - strand at 1651.508 kb on + strand at 1651.509 kb on - strand at 1651.796 kb on + strand at 1651.797 kb on - strand at 1651.990 kb on - strand, within AZOBR_RS21735 at 1651.990 kb on - strand, within AZOBR_RS21735 at 1652.064 kb on + strand, within AZOBR_RS21735 at 1652.064 kb on + strand, within AZOBR_RS21735 at 1652.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,649,315 + -0.7 1,649,315 + -0.4 1,649,315 + -0.7 1,649,315 + +0.4 1,649,316 - -0.0 1,649,348 + -0.0 1,649,348 + +0.7 1,649,348 + +1.3 1,649,348 + -2.5 1,649,349 - -3.9 1,649,349 - -2.4 1,649,349 - +0.2 1,649,432 + -0.6 1,649,432 + -2.7 1,649,432 + -2.8 1,649,433 - +1.1 1,649,433 - -1.6 1,649,433 - +0.1 1,649,588 + AZOBR_RS21720 0.27 +0.6 1,649,589 - AZOBR_RS21720 0.27 +0.1 1,649,738 + AZOBR_RS21720 0.44 +0.9 1,649,738 + AZOBR_RS21720 0.44 +0.1 1,649,738 + AZOBR_RS21720 0.44 -0.2 1,649,739 - AZOBR_RS21720 0.44 -1.9 1,649,822 + AZOBR_RS21720 0.54 -0.6 1,649,822 + AZOBR_RS21720 0.54 +0.1 1,649,822 + AZOBR_RS21720 0.54 -1.0 1,649,823 - AZOBR_RS21720 0.54 -1.5 1,649,823 - AZOBR_RS21720 0.54 +2.0 1,650,068 + AZOBR_RS21720 0.82 -0.8 1,650,069 - AZOBR_RS21720 0.82 +0.3 1,650,158 + -3.9 1,650,233 + -0.1 1,650,233 + +0.3 1,650,233 + +0.7 1,650,233 + -1.6 1,650,233 + +0.7 1,650,233 + -0.3 1,650,234 - +0.6 1,650,234 - -2.0 1,650,234 - -0.0 1,650,234 - +1.9 1,650,234 - -2.2 1,650,536 - AZOBR_RS21725 0.22 +0.8 1,650,823 + AZOBR_RS21725 0.45 -1.4 1,650,823 + AZOBR_RS21725 0.45 +0.3 1,650,824 - AZOBR_RS21725 0.45 -0.2 1,650,824 - AZOBR_RS21725 0.45 -0.5 1,651,027 + AZOBR_RS21725 0.62 -0.3 1,651,028 - AZOBR_RS21725 0.62 -0.4 1,651,028 - AZOBR_RS21725 0.62 -0.9 1,651,130 - AZOBR_RS21725 0.70 +0.9 1,651,418 - +0.5 1,651,508 + +1.3 1,651,509 - -2.2 1,651,796 + -0.2 1,651,797 - -1.1 1,651,990 - AZOBR_RS21735 0.50 +0.3 1,651,990 - AZOBR_RS21735 0.50 -3.2 1,652,064 + AZOBR_RS21735 0.67 -0.1 1,652,064 + AZOBR_RS21735 0.67 -1.7 1,652,404 + -0.2
Or see this region's nucleotide sequence