Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20360

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20360 and AZOBR_RS20365 are separated by 68 nucleotidesAZOBR_RS20365 and AZOBR_RS20370 are separated by 237 nucleotides AZOBR_RS20360: AZOBR_RS20360 - hypothetical protein, at 1,337,101 to 1,337,607 _RS20360 AZOBR_RS20365: AZOBR_RS20365 - hydrogenase expression/formation protein HupF, at 1,337,676 to 1,337,948 _RS20365 AZOBR_RS20370: AZOBR_RS20370 - protein hupE, at 1,338,186 to 1,338,788 _RS20370 Position (kb) 1337 1338Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1336.569 kb on + strandat 1337.537 kb on + strand, within AZOBR_RS20360at 1338.108 kb on - strandat 1338.108 kb on - strandat 1338.166 kb on + strandat 1338.167 kb on - strandat 1338.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,336,569 + +0.5
1,337,537 + AZOBR_RS20360 0.86 +0.1
1,338,108 - +1.1
1,338,108 - +4.2
1,338,166 + +2.7
1,338,167 - +2.0
1,338,167 - +6.3

Or see this region's nucleotide sequence