Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16440

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16440 and AZOBR_RS16445 are separated by 86 nucleotidesAZOBR_RS16445 and AZOBR_RS16450 are separated by 82 nucleotides AZOBR_RS16440: AZOBR_RS16440 - hypothetical protein, at 438,077 to 439,282 _RS16440 AZOBR_RS16445: AZOBR_RS16445 - chemotaxis protein CheY, at 439,369 to 440,067 _RS16445 AZOBR_RS16450: AZOBR_RS16450 - ATPase, at 440,150 to 441,478 _RS16450 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.098 kb on + strandat 437.099 kb on - strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.504 kb on + strandat 437.675 kb on + strandat 437.676 kb on - strandat 437.676 kb on - strandat 437.691 kb on - strandat 437.691 kb on - strandat 438.528 kb on - strand, within AZOBR_RS16440at 438.650 kb on + strand, within AZOBR_RS16440at 439.061 kb on + strand, within AZOBR_RS16440at 440.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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437,098 + +1.6
437,099 - -1.6
437,504 + +0.0
437,504 + +2.2
437,504 + +0.7
437,504 + -0.3
437,675 + -0.6
437,676 - -1.3
437,676 - -0.5
437,691 - -2.7
437,691 - -0.1
438,528 - AZOBR_RS16440 0.37 +1.9
438,650 + AZOBR_RS16440 0.48 +0.1
439,061 + AZOBR_RS16440 0.82 -0.6
440,105 - -0.8

Or see this region's nucleotide sequence