Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16375

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16370 and AZOBR_RS16375 overlap by 1 nucleotidesAZOBR_RS16375 and AZOBR_RS16380 are separated by 139 nucleotides AZOBR_RS16370: AZOBR_RS16370 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 420,451 to 421,479 _RS16370 AZOBR_RS16375: AZOBR_RS16375 - peptidylprolyl isomerase, at 421,479 to 422,924 _RS16375 AZOBR_RS16380: AZOBR_RS16380 - permease, at 423,064 to 424,158 _RS16380 Position (kb) 421 422 423Strain fitness (log2 ratio) -1 0 1at 421.031 kb on + strand, within AZOBR_RS16370at 421.032 kb on - strand, within AZOBR_RS16370at 422.957 kb on - strandat 422.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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421,031 + AZOBR_RS16370 0.56 -1.1
421,032 - AZOBR_RS16370 0.56 +1.5
422,957 - +1.0
422,960 - -1.3

Or see this region's nucleotide sequence