Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15390 and AZOBR_RS15395 are separated by 10 nucleotides AZOBR_RS15395 and AZOBR_RS15400 are separated by 120 nucleotides AZOBR_RS15400 and AZOBR_RS15405 are separated by 54 nucleotides AZOBR_RS15405 and AZOBR_RS15410 are separated by 8 nucleotides
AZOBR_RS15390: AZOBR_RS15390 - chemotaxis protein, at 214,152 to 216,230
_RS15390
AZOBR_RS15395: AZOBR_RS15395 - phytoene synthase, at 216,241 to 217,095
_RS15395
AZOBR_RS15400: AZOBR_RS15400 - squalene synthase, at 217,216 to 218,088
_RS15400
AZOBR_RS15405: AZOBR_RS15405 - phytoene synthase, at 218,143 to 219,063
_RS15405
AZOBR_RS15410: AZOBR_RS15410 - phytoene dehydrogenase, at 219,072 to 220,388
_RS15410
Position (kb) 217
218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 216.872 kb on + strand, within AZOBR_RS15395 at 216.873 kb on - strand, within AZOBR_RS15395 at 216.873 kb on - strand, within AZOBR_RS15395 at 217.043 kb on + strand at 217.044 kb on - strand at 217.067 kb on + strand at 217.068 kb on - strand at 217.162 kb on + strand at 217.162 kb on + strand at 217.162 kb on + strand at 217.163 kb on - strand at 217.163 kb on - strand at 217.164 kb on + strand at 217.164 kb on + strand at 217.164 kb on + strand at 217.167 kb on + strand at 217.421 kb on - strand, within AZOBR_RS15400 at 217.471 kb on + strand, within AZOBR_RS15400 at 217.471 kb on + strand, within AZOBR_RS15400 at 217.642 kb on + strand, within AZOBR_RS15400 at 217.642 kb on + strand, within AZOBR_RS15400 at 218.037 kb on + strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.038 kb on - strand at 218.086 kb on + strand at 218.086 kb on + strand at 218.087 kb on - strand at 218.128 kb on - strand at 218.224 kb on + strand at 218.224 kb on + strand at 218.225 kb on - strand at 218.278 kb on + strand, within AZOBR_RS15405 at 218.279 kb on - strand, within AZOBR_RS15405 at 218.279 kb on - strand, within AZOBR_RS15405 at 218.380 kb on + strand, within AZOBR_RS15405 at 218.380 kb on + strand, within AZOBR_RS15405 at 218.381 kb on - strand, within AZOBR_RS15405 at 218.381 kb on - strand, within AZOBR_RS15405 at 218.569 kb on + strand, within AZOBR_RS15405 at 218.569 kb on + strand, within AZOBR_RS15405 at 218.728 kb on + strand, within AZOBR_RS15405 at 218.728 kb on + strand, within AZOBR_RS15405 at 218.728 kb on + strand, within AZOBR_RS15405 at 218.935 kb on + strand, within AZOBR_RS15405
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 216,872 + AZOBR_RS15395 0.74 -0.8 216,873 - AZOBR_RS15395 0.74 -2.6 216,873 - AZOBR_RS15395 0.74 -1.0 217,043 + -0.3 217,044 - +0.4 217,067 + -0.5 217,068 - -2.1 217,162 + -2.2 217,162 + -1.4 217,162 + -0.3 217,163 - -0.0 217,163 - +1.3 217,164 + +1.7 217,164 + -0.4 217,164 + +1.2 217,167 + -0.1 217,421 - AZOBR_RS15400 0.23 -1.4 217,471 + AZOBR_RS15400 0.29 -1.5 217,471 + AZOBR_RS15400 0.29 -0.6 217,642 + AZOBR_RS15400 0.49 -2.3 217,642 + AZOBR_RS15400 0.49 -2.5 218,037 + -3.0 218,038 - -1.8 218,038 - -1.1 218,038 - -0.6 218,038 - -3.1 218,086 + -0.1 218,086 + -1.1 218,087 - +0.4 218,128 - +0.3 218,224 + +0.1 218,224 + -0.4 218,225 - -1.0 218,278 + AZOBR_RS15405 0.15 -0.6 218,279 - AZOBR_RS15405 0.15 -0.4 218,279 - AZOBR_RS15405 0.15 +0.5 218,380 + AZOBR_RS15405 0.26 -0.3 218,380 + AZOBR_RS15405 0.26 -3.8 218,381 - AZOBR_RS15405 0.26 -1.3 218,381 - AZOBR_RS15405 0.26 -0.2 218,569 + AZOBR_RS15405 0.46 -0.7 218,569 + AZOBR_RS15405 0.46 +0.9 218,728 + AZOBR_RS15405 0.64 +0.8 218,728 + AZOBR_RS15405 0.64 -0.9 218,728 + AZOBR_RS15405 0.64 -2.1 218,935 + AZOBR_RS15405 0.86 -2.1
Or see this region's nucleotide sequence