Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09155 and AZOBR_RS09160 are separated by 21 nucleotides AZOBR_RS09160 and AZOBR_RS09165 are separated by 422 nucleotides AZOBR_RS09165 and AZOBR_RS09170 are separated by 218 nucleotides AZOBR_RS09170 and AZOBR_RS09175 are separated by 19 nucleotides
AZOBR_RS09155: AZOBR_RS09155 - short-chain dehydrogenase, at 1,911,971 to 1,913,002
_RS09155
AZOBR_RS09160: AZOBR_RS09160 - multidrug transporter, at 1,913,024 to 1,913,341
_RS09160
AZOBR_RS09165: AZOBR_RS09165 - hypothetical protein, at 1,913,764 to 1,914,048
_RS09165
AZOBR_RS09170: AZOBR_RS09170 - exported protein of unknown function, at 1,914,267 to 1,914,839
_RS09170
AZOBR_RS09175: AZOBR_RS09175 - hypothetical protein, at 1,914,859 to 1,915,980
_RS09175
Position (kb) 1913
1914
1915 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1913.167 kb on - strand, within AZOBR_RS09160 at 1913.446 kb on + strand at 1913.449 kb on - strand at 1913.449 kb on - strand at 1913.449 kb on - strand at 1913.449 kb on - strand at 1913.449 kb on - strand at 1913.449 kb on - strand at 1913.679 kb on + strand at 1913.868 kb on - strand, within AZOBR_RS09165 at 1913.868 kb on - strand, within AZOBR_RS09165 at 1914.769 kb on + strand, within AZOBR_RS09170 at 1914.770 kb on - strand, within AZOBR_RS09170 at 1914.770 kb on - strand, within AZOBR_RS09170
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,913,167 - AZOBR_RS09160 0.45 +0.9 1,913,446 + -0.3 1,913,449 - +1.3 1,913,449 - +0.6 1,913,449 - +0.8 1,913,449 - -1.8 1,913,449 - +0.4 1,913,449 - -1.2 1,913,679 + -0.3 1,913,868 - AZOBR_RS09165 0.36 -1.9 1,913,868 - AZOBR_RS09165 0.36 +0.5 1,914,769 + AZOBR_RS09170 0.88 -0.8 1,914,770 - AZOBR_RS09170 0.88 -3.1 1,914,770 - AZOBR_RS09170 0.88 -0.4
Or see this region's nucleotide sequence