Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09155

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09145 and AZOBR_RS09150 are separated by 13 nucleotidesAZOBR_RS09150 and AZOBR_RS09155 are separated by 96 nucleotidesAZOBR_RS09155 and AZOBR_RS09160 are separated by 21 nucleotidesAZOBR_RS09160 and AZOBR_RS09165 are separated by 422 nucleotides AZOBR_RS09145: AZOBR_RS09145 - hypothetical protein, at 1,910,977 to 1,911,441 _RS09145 AZOBR_RS09150: AZOBR_RS09150 - peroxiredoxin, at 1,911,455 to 1,911,874 _RS09150 AZOBR_RS09155: AZOBR_RS09155 - short-chain dehydrogenase, at 1,911,971 to 1,913,002 _RS09155 AZOBR_RS09160: AZOBR_RS09160 - multidrug transporter, at 1,913,024 to 1,913,341 _RS09160 AZOBR_RS09165: AZOBR_RS09165 - hypothetical protein, at 1,913,764 to 1,914,048 _RS09165 Position (kb) 1911 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1at 1911.878 kb on + strandat 1911.878 kb on + strandat 1911.893 kb on + strandat 1911.894 kb on - strandat 1911.894 kb on - strandat 1912.331 kb on + strand, within AZOBR_RS09155at 1912.331 kb on + strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.332 kb on - strand, within AZOBR_RS09155at 1912.452 kb on - strand, within AZOBR_RS09155at 1912.743 kb on - strand, within AZOBR_RS09155at 1913.167 kb on - strand, within AZOBR_RS09160at 1913.446 kb on + strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.449 kb on - strandat 1913.679 kb on + strandat 1913.868 kb on - strand, within AZOBR_RS09165at 1913.868 kb on - strand, within AZOBR_RS09165

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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1,911,878 + -0.1
1,911,878 + -1.5
1,911,893 + -1.3
1,911,894 - -0.7
1,911,894 - +0.0
1,912,331 + AZOBR_RS09155 0.35 -0.8
1,912,331 + AZOBR_RS09155 0.35 +1.5
1,912,332 - AZOBR_RS09155 0.35 +0.3
1,912,332 - AZOBR_RS09155 0.35 -0.0
1,912,332 - AZOBR_RS09155 0.35 +0.2
1,912,332 - AZOBR_RS09155 0.35 +0.0
1,912,452 - AZOBR_RS09155 0.47 -0.7
1,912,743 - AZOBR_RS09155 0.75 -2.3
1,913,167 - AZOBR_RS09160 0.45 +0.9
1,913,446 + -0.3
1,913,449 - +1.3
1,913,449 - +0.6
1,913,449 - +0.8
1,913,449 - -1.8
1,913,449 - +0.4
1,913,449 - -1.2
1,913,679 + -0.3
1,913,868 - AZOBR_RS09165 0.36 -1.9
1,913,868 - AZOBR_RS09165 0.36 +0.5

Or see this region's nucleotide sequence