Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08825

Experiment: 2-pentyl-furan 1.780666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08815 and AZOBR_RS08820 are separated by 158 nucleotidesAZOBR_RS08820 and AZOBR_RS08825 are separated by 147 nucleotidesAZOBR_RS08825 and AZOBR_RS08830 are separated by 400 nucleotides AZOBR_RS08815: AZOBR_RS08815 - protein phosphatase, at 1,844,944 to 1,845,723 _RS08815 AZOBR_RS08820: AZOBR_RS08820 - hypothetical protein, at 1,845,882 to 1,846,151 _RS08820 AZOBR_RS08825: AZOBR_RS08825 - agmatine deiminase, at 1,846,299 to 1,847,315 _RS08825 AZOBR_RS08830: AZOBR_RS08830 - putrescine/spermidine ABC transporter permease, at 1,847,716 to 1,848,549 _RS08830 Position (kb) 1846 1847 1848Strain fitness (log2 ratio) -1 0 1 2at 1845.824 kb on + strandat 1845.825 kb on - strandat 1846.161 kb on - strandat 1846.174 kb on - strandat 1846.243 kb on - strandat 1846.474 kb on + strand, within AZOBR_RS08825at 1846.487 kb on - strand, within AZOBR_RS08825at 1846.963 kb on + strand, within AZOBR_RS08825at 1847.573 kb on + strandat 1847.682 kb on + strandat 1848.104 kb on + strand, within AZOBR_RS08830at 1848.104 kb on + strand, within AZOBR_RS08830at 1848.105 kb on - strand, within AZOBR_RS08830at 1848.105 kb on - strand, within AZOBR_RS08830at 1848.105 kb on - strand, within AZOBR_RS08830at 1848.105 kb on - strand, within AZOBR_RS08830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
remove
1,845,824 + -0.1
1,845,825 - -1.3
1,846,161 - +0.0
1,846,174 - -1.6
1,846,243 - +0.8
1,846,474 + AZOBR_RS08825 0.17 -1.4
1,846,487 - AZOBR_RS08825 0.18 +0.5
1,846,963 + AZOBR_RS08825 0.65 +1.2
1,847,573 + +0.1
1,847,682 + -0.9
1,848,104 + AZOBR_RS08830 0.47 +1.8
1,848,104 + AZOBR_RS08830 0.47 -0.3
1,848,105 - AZOBR_RS08830 0.47 +1.5
1,848,105 - AZOBR_RS08830 0.47 -0.2
1,848,105 - AZOBR_RS08830 0.47 -0.4
1,848,105 - AZOBR_RS08830 0.47 +1.0

Or see this region's nucleotide sequence