Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08675

Experiment: 2-pentyl-furan 1.780666667 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08665 and AZOBR_RS08670 are separated by 22 nucleotidesAZOBR_RS08670 and AZOBR_RS08675 are separated by 141 nucleotidesAZOBR_RS08675 and AZOBR_RS08680 are separated by 55 nucleotidesAZOBR_RS08680 and AZOBR_RS08685 are separated by 52 nucleotides AZOBR_RS08665: AZOBR_RS08665 - amino acid ABC transporter permease, at 1,814,671 to 1,815,774 _RS08665 AZOBR_RS08670: AZOBR_RS08670 - arginine ABC transporter ATP-binding protein, at 1,815,797 to 1,816,573 _RS08670 AZOBR_RS08675: AZOBR_RS08675 - histidinol phosphate aminotransferase, at 1,816,715 to 1,817,800 _RS08675 AZOBR_RS08680: AZOBR_RS08680 - multidrug DMT transporter permease, at 1,817,856 to 1,818,689 _RS08680 AZOBR_RS08685: AZOBR_RS08685 - GNAT family acetyltransferase, at 1,818,742 to 1,819,383 _RS08685 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -2 -1 0 1at 1815.728 kb on - strandat 1815.728 kb on - strandat 1815.876 kb on - strand, within AZOBR_RS08670at 1816.090 kb on - strand, within AZOBR_RS08670at 1816.090 kb on - strand, within AZOBR_RS08670at 1816.241 kb on + strand, within AZOBR_RS08670at 1816.242 kb on - strand, within AZOBR_RS08670at 1816.242 kb on - strand, within AZOBR_RS08670at 1816.857 kb on - strand, within AZOBR_RS08675at 1816.935 kb on - strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.204 kb on + strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.205 kb on - strand, within AZOBR_RS08675at 1817.279 kb on + strand, within AZOBR_RS08675at 1817.306 kb on + strand, within AZOBR_RS08675at 1817.306 kb on + strandat 1817.307 kb on - strand, within AZOBR_RS08675at 1817.307 kb on - strand, within AZOBR_RS08675at 1817.307 kb on - strand, within AZOBR_RS08675at 1817.594 kb on + strand, within AZOBR_RS08675at 1817.712 kb on - strandat 1818.575 kb on - strand, within AZOBR_RS08680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
remove
1,815,728 - -0.8
1,815,728 - +0.7
1,815,876 - AZOBR_RS08670 0.10 -1.0
1,816,090 - AZOBR_RS08670 0.38 -1.0
1,816,090 - AZOBR_RS08670 0.38 -1.5
1,816,241 + AZOBR_RS08670 0.57 -1.3
1,816,242 - AZOBR_RS08670 0.57 -1.9
1,816,242 - AZOBR_RS08670 0.57 -0.8
1,816,857 - AZOBR_RS08675 0.13 -0.8
1,816,935 - AZOBR_RS08675 0.20 -0.3
1,817,204 + AZOBR_RS08675 0.45 -0.8
1,817,204 + AZOBR_RS08675 0.45 -0.7
1,817,204 + AZOBR_RS08675 0.45 -1.0
1,817,204 + AZOBR_RS08675 0.45 -0.0
1,817,204 + AZOBR_RS08675 0.45 -0.2
1,817,204 + AZOBR_RS08675 0.45 +0.3
1,817,204 + AZOBR_RS08675 0.45 +0.4
1,817,205 - AZOBR_RS08675 0.45 -0.2
1,817,205 - AZOBR_RS08675 0.45 +0.1
1,817,205 - AZOBR_RS08675 0.45 -0.2
1,817,279 + AZOBR_RS08675 0.52 -0.0
1,817,306 + AZOBR_RS08675 0.54 -0.2
1,817,306 + +0.7
1,817,307 - AZOBR_RS08675 0.55 +0.3
1,817,307 - AZOBR_RS08675 0.55 -0.4
1,817,307 - AZOBR_RS08675 0.55 +0.1
1,817,594 + AZOBR_RS08675 0.81 +1.1
1,817,712 - -0.1
1,818,575 - AZOBR_RS08680 0.86 +1.0

Or see this region's nucleotide sequence