Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08490 and AZOBR_RS08500 are separated by 987 nucleotides AZOBR_RS08500 and AZOBR_RS08505 are separated by 39 nucleotides AZOBR_RS08505 and AZOBR_RS08510 are separated by 51 nucleotides
AZOBR_RS08490: AZOBR_RS08490 - hypothetical protein, at 1,781,654 to 1,781,872
_RS08490
AZOBR_RS08500: AZOBR_RS08500 - ABC transporter permease, at 1,782,860 to 1,783,843
_RS08500
AZOBR_RS08505: AZOBR_RS08505 - hypothetical protein, at 1,783,883 to 1,784,560
_RS08505
AZOBR_RS08510: AZOBR_RS08510 - alanine dehydrogenase, at 1,784,612 to 1,785,730
_RS08510
Position (kb) 1782
1783
1784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1782.042 kb on + strand at 1782.117 kb on + strand at 1782.117 kb on + strand at 1782.117 kb on + strand at 1782.253 kb on - strand at 1782.330 kb on + strand at 1782.330 kb on + strand at 1782.331 kb on - strand at 1782.627 kb on - strand at 1782.627 kb on - strand at 1782.627 kb on - strand at 1782.729 kb on - strand at 1782.768 kb on - strand at 1782.977 kb on + strand, within AZOBR_RS08500 at 1782.977 kb on + strand, within AZOBR_RS08500 at 1783.005 kb on - strand, within AZOBR_RS08500 at 1783.106 kb on + strand, within AZOBR_RS08500 at 1783.106 kb on + strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.382 kb on + strand, within AZOBR_RS08500 at 1783.382 kb on + strand, within AZOBR_RS08500 at 1783.383 kb on - strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.718 kb on + strand, within AZOBR_RS08500 at 1783.719 kb on - strand, within AZOBR_RS08500 at 1783.907 kb on + strand at 1783.907 kb on + strand at 1783.908 kb on - strand at 1784.060 kb on + strand, within AZOBR_RS08505 at 1784.061 kb on - strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.190 kb on - strand, within AZOBR_RS08505 at 1784.190 kb on - strand, within AZOBR_RS08505 at 1784.379 kb on - strand at 1784.465 kb on + strand, within AZOBR_RS08505
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,782,042 + -0.1 1,782,117 + +1.1 1,782,117 + -0.3 1,782,117 + -1.1 1,782,253 - -0.8 1,782,330 + -0.3 1,782,330 + -0.6 1,782,331 - +3.0 1,782,627 - +0.3 1,782,627 - +0.6 1,782,627 - -0.8 1,782,729 - +1.0 1,782,768 - -0.6 1,782,977 + AZOBR_RS08500 0.12 +0.5 1,782,977 + AZOBR_RS08500 0.12 -1.1 1,783,005 - AZOBR_RS08500 0.15 -3.1 1,783,106 + AZOBR_RS08500 0.25 +1.0 1,783,106 + AZOBR_RS08500 0.25 -0.2 1,783,107 - AZOBR_RS08500 0.25 -0.8 1,783,107 - AZOBR_RS08500 0.25 -1.9 1,783,107 - AZOBR_RS08500 0.25 -1.6 1,783,232 + AZOBR_RS08500 0.38 -1.0 1,783,232 + AZOBR_RS08500 0.38 -2.1 1,783,232 + AZOBR_RS08500 0.38 +0.3 1,783,232 + AZOBR_RS08500 0.38 -0.6 1,783,379 + AZOBR_RS08500 0.53 +1.0 1,783,379 + AZOBR_RS08500 0.53 +1.4 1,783,379 + AZOBR_RS08500 0.53 -0.8 1,783,379 + AZOBR_RS08500 0.53 -1.1 1,783,382 + AZOBR_RS08500 0.53 -1.6 1,783,382 + AZOBR_RS08500 0.53 -1.6 1,783,383 - AZOBR_RS08500 0.53 -0.1 1,783,517 + AZOBR_RS08500 0.67 +1.1 1,783,517 + AZOBR_RS08500 0.67 -2.2 1,783,517 + AZOBR_RS08500 0.67 +0.7 1,783,517 + AZOBR_RS08500 0.67 -2.4 1,783,518 - AZOBR_RS08500 0.67 -1.1 1,783,518 - AZOBR_RS08500 0.67 -1.6 1,783,518 - AZOBR_RS08500 0.67 -0.3 1,783,718 + AZOBR_RS08500 0.87 -0.2 1,783,719 - AZOBR_RS08500 0.87 -1.8 1,783,907 + +0.6 1,783,907 + +0.5 1,783,908 - +0.4 1,784,060 + AZOBR_RS08505 0.26 +0.7 1,784,061 - AZOBR_RS08505 0.26 +3.5 1,784,189 + AZOBR_RS08505 0.45 +0.8 1,784,189 + AZOBR_RS08505 0.45 -1.0 1,784,189 + AZOBR_RS08505 0.45 +1.4 1,784,190 - AZOBR_RS08505 0.45 +0.9 1,784,190 - AZOBR_RS08505 0.45 -0.4 1,784,379 - +0.9 1,784,465 + AZOBR_RS08505 0.86 -2.6
Or see this region's nucleotide sequence