Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05505 and AZOBR_RS05510 are separated by 46 nucleotides AZOBR_RS05510 and AZOBR_RS05515 are separated by 305 nucleotides AZOBR_RS05515 and AZOBR_RS05520 are separated by 34 nucleotides AZOBR_RS05520 and AZOBR_RS05525 are separated by 98 nucleotides
AZOBR_RS05505: AZOBR_RS05505 - nitrogen fixation protein NifU, at 1,172,022 to 1,172,939
_RS05505
AZOBR_RS05510: AZOBR_RS05510 - hypothetical protein, at 1,172,986 to 1,173,366
_RS05510
AZOBR_RS05515: AZOBR_RS05515 - hypothetical protein, at 1,173,672 to 1,174,145
_RS05515
AZOBR_RS05520: AZOBR_RS05520 - hypothetical protein, at 1,174,180 to 1,174,740
_RS05520
AZOBR_RS05525: AZOBR_RS05525 - ferredoxin, at 1,174,839 to 1,175,132
_RS05525
Position (kb) 1173
1174
1175 Strain fitness (log2 ratio) -2
-1
0
1 at 1172.929 kb on + strand at 1173.249 kb on - strand, within AZOBR_RS05510 at 1173.822 kb on + strand, within AZOBR_RS05515 at 1173.823 kb on - strand, within AZOBR_RS05515 at 1173.840 kb on + strand, within AZOBR_RS05515 at 1173.840 kb on + strand, within AZOBR_RS05515 at 1173.919 kb on - strand, within AZOBR_RS05515 at 1174.577 kb on + strand, within AZOBR_RS05520 at 1174.578 kb on - strand, within AZOBR_RS05520 at 1174.578 kb on - strand, within AZOBR_RS05520 at 1174.718 kb on + strand at 1174.718 kb on + strand at 1174.719 kb on - strand at 1174.824 kb on + strand at 1174.824 kb on + strand at 1174.825 kb on - strand at 1174.825 kb on - strand at 1174.825 kb on - strand at 1174.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 1,172,929 + -0.8 1,173,249 - AZOBR_RS05510 0.69 +0.6 1,173,822 + AZOBR_RS05515 0.32 -0.4 1,173,823 - AZOBR_RS05515 0.32 +0.9 1,173,840 + AZOBR_RS05515 0.35 -1.5 1,173,840 + AZOBR_RS05515 0.35 +1.5 1,173,919 - AZOBR_RS05515 0.52 +0.9 1,174,577 + AZOBR_RS05520 0.71 +1.3 1,174,578 - AZOBR_RS05520 0.71 -2.1 1,174,578 - AZOBR_RS05520 0.71 -2.0 1,174,718 + -0.5 1,174,718 + +0.1 1,174,719 - -1.7 1,174,824 + +1.5 1,174,824 + -0.2 1,174,825 - +0.6 1,174,825 - -0.1 1,174,825 - -0.5 1,174,825 - -0.3
Or see this region's nucleotide sequence