Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04715 and AZOBR_RS04720 overlap by 4 nucleotides AZOBR_RS04720 and AZOBR_RS04725 overlap by 4 nucleotides AZOBR_RS04725 and AZOBR_RS04730 are separated by 53 nucleotides
AZOBR_RS04715: AZOBR_RS04715 - putative RND superfamily drug exporter, at 992,379 to 994,715
_RS04715
AZOBR_RS04720: AZOBR_RS04720 - conserved exported protein of unknown function, at 994,712 to 995,329
_RS04720
AZOBR_RS04725: AZOBR_RS04725 - thioesterase, at 995,326 to 995,733
_RS04725
AZOBR_RS04730: AZOBR_RS04730 - hypothetical protein, at 995,787 to 997,193
_RS04730
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 993.757 kb on + strand, within AZOBR_RS04715 at 993.769 kb on + strand, within AZOBR_RS04715 at 993.770 kb on - strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 994.387 kb on + strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.661 kb on - strand at 995.008 kb on - strand, within AZOBR_RS04720 at 995.463 kb on - strand, within AZOBR_RS04725 at 995.543 kb on + strand, within AZOBR_RS04725 at 995.544 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.657 kb on + strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.696 kb on + strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand at 996.089 kb on + strand, within AZOBR_RS04730 at 996.090 kb on - strand, within AZOBR_RS04730 at 996.090 kb on - strand, within AZOBR_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 993,757 + AZOBR_RS04715 0.59 +0.4 993,769 + AZOBR_RS04715 0.59 -0.5 993,770 - AZOBR_RS04715 0.60 -0.3 993,936 + AZOBR_RS04715 0.67 -1.8 993,936 + AZOBR_RS04715 0.67 -0.3 993,936 + AZOBR_RS04715 0.67 +2.7 993,937 - AZOBR_RS04715 0.67 +0.2 993,937 - AZOBR_RS04715 0.67 -0.1 994,387 + AZOBR_RS04715 0.86 -1.8 994,388 - AZOBR_RS04715 0.86 +0.1 994,388 - AZOBR_RS04715 0.86 +0.7 994,388 - AZOBR_RS04715 0.86 +0.2 994,388 - AZOBR_RS04715 0.86 -1.4 994,388 - AZOBR_RS04715 0.86 +0.2 994,388 - AZOBR_RS04715 0.86 +0.8 994,388 - AZOBR_RS04715 0.86 +0.9 994,661 - -0.1 995,008 - AZOBR_RS04720 0.48 +0.0 995,463 - AZOBR_RS04725 0.34 -4.4 995,543 + AZOBR_RS04725 0.53 -1.9 995,544 - AZOBR_RS04725 0.53 +0.7 995,649 - AZOBR_RS04725 0.79 -0.4 995,649 - AZOBR_RS04725 0.79 +0.4 995,657 + AZOBR_RS04725 0.81 -0.4 995,658 - AZOBR_RS04725 0.81 -2.5 995,658 - AZOBR_RS04725 0.81 -0.1 995,658 - AZOBR_RS04725 0.81 +0.1 995,658 - AZOBR_RS04725 0.81 -0.1 995,658 - AZOBR_RS04725 0.81 -1.6 995,696 + +0.7 995,697 - -2.1 995,697 - -1.9 995,697 - -3.9 995,697 - -0.5 996,089 + AZOBR_RS04730 0.21 -1.7 996,090 - AZOBR_RS04730 0.22 +0.2 996,090 - AZOBR_RS04730 0.22 +0.1
Or see this region's nucleotide sequence