Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03240 and AZOBR_RS03245 are separated by 141 nucleotides AZOBR_RS03245 and AZOBR_RS03250 are separated by 65 nucleotides AZOBR_RS03250 and AZOBR_RS03255 are separated by 107 nucleotides
AZOBR_RS03240: AZOBR_RS03240 - recombinase XerD, at 687,802 to 688,683
_RS03240
AZOBR_RS03245: AZOBR_RS03245 - malate synthase, at 688,825 to 690,429
_RS03245
AZOBR_RS03250: AZOBR_RS03250 - hypothetical protein, at 690,495 to 690,929
_RS03250
AZOBR_RS03255: AZOBR_RS03255 - hypothetical protein, at 691,037 to 691,909
_RS03255
Position (kb) 688
689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 687.907 kb on + strand, within AZOBR_RS03240 at 688.681 kb on + strand at 688.754 kb on - strand at 688.755 kb on + strand at 689.279 kb on - strand, within AZOBR_RS03245 at 689.398 kb on + strand, within AZOBR_RS03245 at 689.446 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.453 kb on - strand, within AZOBR_RS03245 at 689.521 kb on + strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.654 kb on - strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.749 kb on + strand, within AZOBR_RS03245 at 689.750 kb on - strand, within AZOBR_RS03245 at 689.750 kb on - strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.815 kb on + strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.816 kb on - strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.965 kb on + strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 689.966 kb on - strand, within AZOBR_RS03245 at 690.325 kb on + strand at 690.400 kb on + strand at 690.401 kb on - strand at 690.462 kb on - strand at 690.462 kb on - strand at 690.462 kb on - strand at 690.819 kb on + strand, within AZOBR_RS03250 at 690.820 kb on - strand, within AZOBR_RS03250 at 690.820 kb on - strand, within AZOBR_RS03250 at 691.220 kb on + strand, within AZOBR_RS03255 at 691.229 kb on + strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255 at 691.326 kb on - strand, within AZOBR_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 687,907 + AZOBR_RS03240 0.12 -3.9 688,681 + +1.3 688,754 - +1.9 688,755 + -0.4 689,279 - AZOBR_RS03245 0.28 -2.1 689,398 + AZOBR_RS03245 0.36 +0.3 689,446 + AZOBR_RS03245 0.39 +0.2 689,452 + AZOBR_RS03245 0.39 -0.6 689,452 + AZOBR_RS03245 0.39 -0.4 689,452 + AZOBR_RS03245 0.39 -1.4 689,453 - AZOBR_RS03245 0.39 -2.1 689,521 + AZOBR_RS03245 0.43 -2.0 689,522 - AZOBR_RS03245 0.43 -0.7 689,522 - AZOBR_RS03245 0.43 -2.4 689,606 - AZOBR_RS03245 0.49 +0.5 689,606 - AZOBR_RS03245 0.49 +1.3 689,654 - AZOBR_RS03245 0.52 -1.6 689,749 + AZOBR_RS03245 0.58 -0.1 689,749 + AZOBR_RS03245 0.58 +1.7 689,749 + AZOBR_RS03245 0.58 +1.4 689,749 + AZOBR_RS03245 0.58 -0.8 689,750 - AZOBR_RS03245 0.58 -4.0 689,750 - AZOBR_RS03245 0.58 -2.0 689,815 + AZOBR_RS03245 0.62 +1.0 689,815 + AZOBR_RS03245 0.62 +0.8 689,815 + AZOBR_RS03245 0.62 -0.9 689,816 - AZOBR_RS03245 0.62 -0.4 689,816 - AZOBR_RS03245 0.62 -3.0 689,816 - AZOBR_RS03245 0.62 +0.0 689,816 - AZOBR_RS03245 0.62 -0.4 689,965 + AZOBR_RS03245 0.71 +0.6 689,965 + AZOBR_RS03245 0.71 -0.9 689,965 + AZOBR_RS03245 0.71 +0.7 689,965 + AZOBR_RS03245 0.71 -0.7 689,966 - AZOBR_RS03245 0.71 -0.5 689,966 - AZOBR_RS03245 0.71 -1.2 689,966 - AZOBR_RS03245 0.71 -0.7 689,966 - AZOBR_RS03245 0.71 +0.7 689,966 - AZOBR_RS03245 0.71 +0.9 689,966 - AZOBR_RS03245 0.71 +0.3 689,966 - AZOBR_RS03245 0.71 +1.0 690,325 + -2.6 690,400 + +0.3 690,401 - +0.3 690,462 - +0.5 690,462 - +0.2 690,462 - +1.1 690,819 + AZOBR_RS03250 0.74 -0.7 690,820 - AZOBR_RS03250 0.75 -0.5 690,820 - AZOBR_RS03250 0.75 +1.2 691,220 + AZOBR_RS03255 0.21 +1.0 691,229 + AZOBR_RS03255 0.22 -0.1 691,326 - AZOBR_RS03255 0.33 +1.6 691,326 - AZOBR_RS03255 0.33 +0.1 691,326 - AZOBR_RS03255 0.33 +0.6
Or see this region's nucleotide sequence