Experiment: 2-pentyl-furan 1.780666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01360 and AZOBR_RS01365 are separated by 0 nucleotides AZOBR_RS01365 and AZOBR_RS01370 are separated by 125 nucleotides AZOBR_RS01370 and AZOBR_RS01375 are separated by 11 nucleotides AZOBR_RS01375 and AZOBR_RS01380 are separated by 461 nucleotides
AZOBR_RS01360: AZOBR_RS01360 - lysine 2 3-aminomutase, at 282,553 to 283,587
_RS01360
AZOBR_RS01365: AZOBR_RS01365 - membrane protein, at 283,588 to 284,142
_RS01365
AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161
_RS01370
AZOBR_RS01375: AZOBR_RS01375 - hypothetical protein, at 285,173 to 285,685
_RS01375
AZOBR_RS01380: AZOBR_RS01380 - hypothetical protein, at 286,147 to 286,452
_RS01380
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 283.342 kb on + strand, within AZOBR_RS01360 at 283.343 kb on - strand, within AZOBR_RS01360 at 283.462 kb on + strand, within AZOBR_RS01360 at 283.463 kb on - strand at 283.463 kb on - strand, within AZOBR_RS01360 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.763 kb on + strand, within AZOBR_RS01365 at 283.812 kb on - strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.832 kb on + strand, within AZOBR_RS01365 at 283.833 kb on - strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.033 kb on + strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.034 kb on - strand, within AZOBR_RS01365 at 284.076 kb on - strand, within AZOBR_RS01365 at 284.482 kb on - strand, within AZOBR_RS01370 at 284.601 kb on + strand, within AZOBR_RS01370 at 284.601 kb on + strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.683 kb on - strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.706 kb on + strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.707 kb on - strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.775 kb on + strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 284.776 kb on - strand, within AZOBR_RS01370 at 285.160 kb on - strand at 285.160 kb on - strand at 285.394 kb on - strand, within AZOBR_RS01375 at 285.394 kb on - strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.642 kb on + strand at 285.643 kb on - strand at 285.717 kb on - strand at 285.754 kb on + strand at 285.755 kb on - strand at 285.755 kb on - strand at 285.836 kb on + strand at 286.083 kb on - strand at 286.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM remove 283,342 + AZOBR_RS01360 0.76 -0.9 283,343 - AZOBR_RS01360 0.76 -2.0 283,462 + AZOBR_RS01360 0.88 -0.9 283,463 - +1.9 283,463 - AZOBR_RS01360 0.88 -1.4 283,763 + AZOBR_RS01365 0.32 -0.7 283,763 + AZOBR_RS01365 0.32 -3.4 283,812 - AZOBR_RS01365 0.40 -1.5 283,832 + AZOBR_RS01365 0.44 -0.1 283,832 + AZOBR_RS01365 0.44 -1.6 283,832 + AZOBR_RS01365 0.44 -1.9 283,833 - AZOBR_RS01365 0.44 +0.5 284,033 + AZOBR_RS01365 0.80 +1.0 284,033 + AZOBR_RS01365 0.80 +1.2 284,033 + AZOBR_RS01365 0.80 -3.4 284,033 + AZOBR_RS01365 0.80 -0.1 284,034 - AZOBR_RS01365 0.80 -0.8 284,034 - AZOBR_RS01365 0.80 +0.5 284,034 - AZOBR_RS01365 0.80 +0.1 284,076 - AZOBR_RS01365 0.88 +1.3 284,482 - AZOBR_RS01370 0.24 -3.0 284,601 + AZOBR_RS01370 0.37 +1.4 284,601 + AZOBR_RS01370 0.37 +0.1 284,683 - AZOBR_RS01370 0.46 -1.9 284,683 - AZOBR_RS01370 0.46 -0.7 284,683 - AZOBR_RS01370 0.46 -2.5 284,706 + AZOBR_RS01370 0.49 -2.0 284,706 + AZOBR_RS01370 0.49 +0.9 284,706 + AZOBR_RS01370 0.49 +0.0 284,707 - AZOBR_RS01370 0.49 -0.3 284,707 - AZOBR_RS01370 0.49 +1.3 284,707 - AZOBR_RS01370 0.49 +0.2 284,775 + AZOBR_RS01370 0.57 -2.1 284,775 + AZOBR_RS01370 0.57 +0.3 284,775 + AZOBR_RS01370 0.57 +0.8 284,775 + AZOBR_RS01370 0.57 -0.3 284,775 + AZOBR_RS01370 0.57 -0.2 284,775 + AZOBR_RS01370 0.57 +0.1 284,776 - AZOBR_RS01370 0.57 +1.6 284,776 - AZOBR_RS01370 0.57 -1.7 284,776 - AZOBR_RS01370 0.57 +0.5 284,776 - AZOBR_RS01370 0.57 -0.5 284,776 - AZOBR_RS01370 0.57 -0.0 285,160 - +0.5 285,160 - +0.3 285,394 - AZOBR_RS01375 0.43 +0.2 285,394 - AZOBR_RS01375 0.43 -0.2 285,550 + AZOBR_RS01375 0.73 -1.3 285,550 + AZOBR_RS01375 0.73 +0.1 285,642 + +1.0 285,643 - +1.6 285,717 - +0.7 285,754 + -0.6 285,755 - -1.5 285,755 - -0.2 285,836 + -2.1 286,083 - -0.4 286,083 - +0.3
Or see this region's nucleotide sequence