Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00100

Experiment: 2-pentyl-furan 1.780666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00095 and AZOBR_RS00100 are separated by 49 nucleotidesAZOBR_RS00100 and AZOBR_RS00105 are separated by 442 nucleotides AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482 _RS00095 AZOBR_RS00100: AZOBR_RS00100 - membrane protein, at 9,532 to 9,975 _RS00100 AZOBR_RS00105: AZOBR_RS00105 - ornithine decarboxylase, at 10,418 to 11,554 _RS00105 Position (kb) 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.544 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.703 kb on + strand, within AZOBR_RS00095at 8.704 kb on - strand, within AZOBR_RS00095at 8.907 kb on + strand, within AZOBR_RS00095at 9.546 kb on - strandat 9.602 kb on + strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.798 kb on - strand, within AZOBR_RS00100at 9.989 kb on - strandat 10.046 kb on + strandat 10.067 kb on + strandat 10.068 kb on - strandat 10.068 kb on - strandat 10.144 kb on + strandat 10.144 kb on + strandat 10.145 kb on - strandat 10.169 kb on + strandat 10.170 kb on - strandat 10.193 kb on + strandat 10.426 kb on + strandat 10.505 kb on + strandat 10.505 kb on + strandat 10.506 kb on - strandat 10.506 kb on - strandat 10.506 kb on - strandat 10.547 kb on + strand, within AZOBR_RS00105

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.780666667 mM
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8,544 + AZOBR_RS00095 0.21 +0.6
8,544 + AZOBR_RS00095 0.21 +0.0
8,544 + AZOBR_RS00095 0.21 -2.0
8,703 + AZOBR_RS00095 0.34 -1.6
8,703 + AZOBR_RS00095 0.34 +2.9
8,704 - AZOBR_RS00095 0.34 -0.0
8,907 + AZOBR_RS00095 0.51 -1.5
9,546 - +0.6
9,602 + AZOBR_RS00100 0.16 +0.3
9,603 - AZOBR_RS00100 0.16 +0.0
9,603 - AZOBR_RS00100 0.16 -1.1
9,603 - AZOBR_RS00100 0.16 -1.2
9,603 - AZOBR_RS00100 0.16 +1.9
9,798 - AZOBR_RS00100 0.60 -0.2
9,989 - +0.3
10,046 + +1.9
10,067 + -1.2
10,068 - +0.3
10,068 - +0.3
10,144 + +0.1
10,144 + +1.0
10,145 - +1.9
10,169 + -0.2
10,170 - +0.9
10,193 + -2.5
10,426 + +0.6
10,505 + +0.5
10,505 + +0.1
10,506 - +0.6
10,506 - +0.3
10,506 - +1.9
10,547 + AZOBR_RS00105 0.11 -2.8

Or see this region's nucleotide sequence