Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS32100 and AZOBR_RS32105 overlap by 4 nucleotides AZOBR_RS32105 and AZOBR_RS32110 are separated by 11 nucleotides AZOBR_RS32110 and AZOBR_RS32115 are separated by 107 nucleotides AZOBR_RS32115 and AZOBR_RS32120 are separated by 391 nucleotides
AZOBR_RS32100: AZOBR_RS32100 - cytochrome C, at 572,893 to 573,513
_RS32100
AZOBR_RS32105: AZOBR_RS32105 - nitrate reductase, at 573,510 to 573,992
_RS32105
AZOBR_RS32110: AZOBR_RS32110 - nitrate reductase catalytic subunit, at 574,004 to 576,514
_RS32110
AZOBR_RS32115: AZOBR_RS32115 - nitrate reductase, at 576,622 to 576,855
_RS32115
AZOBR_RS32120: AZOBR_RS32120 - hypothetical protein, at 577,247 to 577,744
_RS32120
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 573.005 kb on + strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.006 kb on - strand, within AZOBR_RS32100 at 573.317 kb on + strand, within AZOBR_RS32100 at 573.620 kb on - strand, within AZOBR_RS32105 at 573.761 kb on - strand, within AZOBR_RS32105 at 573.761 kb on - strand, within AZOBR_RS32105 at 574.392 kb on + strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.393 kb on - strand, within AZOBR_RS32110 at 574.435 kb on - strand, within AZOBR_RS32110 at 574.464 kb on + strand, within AZOBR_RS32110 at 574.465 kb on - strand, within AZOBR_RS32110 at 574.545 kb on + strand, within AZOBR_RS32110 at 574.545 kb on + strand, within AZOBR_RS32110 at 574.545 kb on + strand, within AZOBR_RS32110 at 574.545 kb on + strand, within AZOBR_RS32110 at 574.546 kb on - strand, within AZOBR_RS32110 at 574.546 kb on - strand, within AZOBR_RS32110 at 574.546 kb on - strand, within AZOBR_RS32110 at 574.546 kb on - strand, within AZOBR_RS32110 at 574.555 kb on - strand, within AZOBR_RS32110 at 574.597 kb on - strand, within AZOBR_RS32110 at 574.623 kb on + strand, within AZOBR_RS32110 at 574.623 kb on + strand, within AZOBR_RS32110 at 574.624 kb on - strand, within AZOBR_RS32110 at 574.624 kb on - strand, within AZOBR_RS32110 at 574.624 kb on - strand, within AZOBR_RS32110 at 574.624 kb on - strand, within AZOBR_RS32110 at 574.657 kb on - strand, within AZOBR_RS32110 at 574.707 kb on + strand, within AZOBR_RS32110 at 574.707 kb on + strand, within AZOBR_RS32110 at 574.708 kb on - strand, within AZOBR_RS32110 at 574.708 kb on - strand, within AZOBR_RS32110 at 574.708 kb on - strand, within AZOBR_RS32110 at 574.708 kb on - strand, within AZOBR_RS32110 at 574.963 kb on - strand, within AZOBR_RS32110 at 575.010 kb on + strand, within AZOBR_RS32110 at 575.010 kb on + strand, within AZOBR_RS32110 at 575.010 kb on + strand, within AZOBR_RS32110 at 575.011 kb on - strand, within AZOBR_RS32110 at 575.067 kb on + strand, within AZOBR_RS32110 at 575.331 kb on + strand, within AZOBR_RS32110 at 575.331 kb on + strand, within AZOBR_RS32110 at 575.331 kb on + strand, within AZOBR_RS32110 at 575.331 kb on + strand, within AZOBR_RS32110 at 575.332 kb on - strand, within AZOBR_RS32110 at 575.488 kb on - strand, within AZOBR_RS32110 at 575.688 kb on + strand, within AZOBR_RS32110 at 575.689 kb on - strand, within AZOBR_RS32110 at 575.689 kb on - strand, within AZOBR_RS32110 at 575.689 kb on - strand, within AZOBR_RS32110 at 575.689 kb on - strand, within AZOBR_RS32110 at 575.763 kb on + strand, within AZOBR_RS32110 at 575.763 kb on + strand, within AZOBR_RS32110 at 575.763 kb on + strand, within AZOBR_RS32110 at 575.764 kb on - strand, within AZOBR_RS32110 at 575.764 kb on - strand, within AZOBR_RS32110 at 575.764 kb on - strand, within AZOBR_RS32110 at 575.898 kb on + strand, within AZOBR_RS32110 at 575.898 kb on + strand, within AZOBR_RS32110 at 576.028 kb on - strand, within AZOBR_RS32110 at 576.223 kb on - strand, within AZOBR_RS32110 at 576.244 kb on - strand, within AZOBR_RS32110 at 576.244 kb on - strand, within AZOBR_RS32110 at 576.259 kb on + strand, within AZOBR_RS32110 at 576.493 kb on - strand at 576.514 kb on + strand at 576.515 kb on - strand at 576.626 kb on + strand at 576.626 kb on + strand at 576.635 kb on + strand at 576.636 kb on - strand at 576.636 kb on - strand at 576.891 kb on + strand at 577.138 kb on + strand at 577.138 kb on + strand at 577.139 kb on - strand at 577.149 kb on - strand at 577.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 573,005 + AZOBR_RS32100 0.18 -1.9 573,006 - AZOBR_RS32100 0.18 +0.3 573,006 - AZOBR_RS32100 0.18 +1.1 573,006 - AZOBR_RS32100 0.18 +1.4 573,006 - AZOBR_RS32100 0.18 -2.9 573,317 + AZOBR_RS32100 0.68 +0.7 573,620 - AZOBR_RS32105 0.23 -0.2 573,761 - AZOBR_RS32105 0.52 -0.2 573,761 - AZOBR_RS32105 0.52 -0.7 574,392 + AZOBR_RS32110 0.15 +3.0 574,393 - AZOBR_RS32110 0.15 -0.1 574,393 - AZOBR_RS32110 0.15 -1.9 574,393 - AZOBR_RS32110 0.15 +0.0 574,435 - AZOBR_RS32110 0.17 +0.0 574,464 + AZOBR_RS32110 0.18 +0.2 574,465 - AZOBR_RS32110 0.18 +1.5 574,545 + AZOBR_RS32110 0.22 +0.0 574,545 + AZOBR_RS32110 0.22 +0.8 574,545 + AZOBR_RS32110 0.22 -3.5 574,545 + AZOBR_RS32110 0.22 +1.4 574,546 - AZOBR_RS32110 0.22 -0.7 574,546 - AZOBR_RS32110 0.22 -0.8 574,546 - AZOBR_RS32110 0.22 -1.4 574,546 - AZOBR_RS32110 0.22 -3.6 574,555 - AZOBR_RS32110 0.22 -0.3 574,597 - AZOBR_RS32110 0.24 +0.8 574,623 + AZOBR_RS32110 0.25 -2.6 574,623 + AZOBR_RS32110 0.25 -1.0 574,624 - AZOBR_RS32110 0.25 +0.2 574,624 - AZOBR_RS32110 0.25 -1.1 574,624 - AZOBR_RS32110 0.25 +0.5 574,624 - AZOBR_RS32110 0.25 -0.5 574,657 - AZOBR_RS32110 0.26 +0.4 574,707 + AZOBR_RS32110 0.28 +1.2 574,707 + AZOBR_RS32110 0.28 +1.0 574,708 - AZOBR_RS32110 0.28 +2.6 574,708 - AZOBR_RS32110 0.28 -1.9 574,708 - AZOBR_RS32110 0.28 -1.7 574,708 - AZOBR_RS32110 0.28 -1.8 574,963 - AZOBR_RS32110 0.38 +0.1 575,010 + AZOBR_RS32110 0.40 +0.2 575,010 + AZOBR_RS32110 0.40 -1.3 575,010 + AZOBR_RS32110 0.40 -1.9 575,011 - AZOBR_RS32110 0.40 -0.1 575,067 + AZOBR_RS32110 0.42 -1.7 575,331 + AZOBR_RS32110 0.53 +1.3 575,331 + AZOBR_RS32110 0.53 -1.9 575,331 + AZOBR_RS32110 0.53 -0.8 575,331 + AZOBR_RS32110 0.53 -2.5 575,332 - AZOBR_RS32110 0.53 -1.9 575,488 - AZOBR_RS32110 0.59 -0.5 575,688 + AZOBR_RS32110 0.67 -1.2 575,689 - AZOBR_RS32110 0.67 -0.6 575,689 - AZOBR_RS32110 0.67 +2.2 575,689 - AZOBR_RS32110 0.67 +2.1 575,689 - AZOBR_RS32110 0.67 +1.2 575,763 + AZOBR_RS32110 0.70 +0.2 575,763 + AZOBR_RS32110 0.70 +0.6 575,763 + AZOBR_RS32110 0.70 -1.2 575,764 - AZOBR_RS32110 0.70 +1.2 575,764 - AZOBR_RS32110 0.70 +0.2 575,764 - AZOBR_RS32110 0.70 +1.2 575,898 + AZOBR_RS32110 0.75 -0.9 575,898 + AZOBR_RS32110 0.75 +1.2 576,028 - AZOBR_RS32110 0.81 +0.6 576,223 - AZOBR_RS32110 0.88 +1.8 576,244 - AZOBR_RS32110 0.89 -0.6 576,244 - AZOBR_RS32110 0.89 -0.2 576,259 + AZOBR_RS32110 0.90 +0.1 576,493 - -1.3 576,514 + -0.2 576,515 - -0.8 576,626 + +0.9 576,626 + -1.0 576,635 + +0.0 576,636 - -2.0 576,636 - -0.3 576,891 + -2.3 577,138 + +0.0 577,138 + +0.3 577,139 - -1.3 577,149 - -3.0 577,249 - +0.2
Or see this region's nucleotide sequence