Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30075 and AZOBR_RS30080 are separated by 25 nucleotides AZOBR_RS30080 and AZOBR_RS30085 are separated by 309 nucleotides AZOBR_RS30085 and AZOBR_RS30090 are separated by 75 nucleotides
AZOBR_RS30075: AZOBR_RS30075 - flagellar hook protein, at 86,642 to 88,039
_RS30075
AZOBR_RS30080: AZOBR_RS30080 - flagellar hook protein, at 88,065 to 89,297
_RS30080
AZOBR_RS30085: AZOBR_RS30085 - DNA-binding protein, at 89,607 to 90,215
_RS30085
AZOBR_RS30090: AZOBR_RS30090 - hypothetical protein, at 90,291 to 90,614
_RS30090
Position (kb) 88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 87.082 kb on - strand, within AZOBR_RS30075 at 87.219 kb on + strand, within AZOBR_RS30075 at 87.220 kb on - strand, within AZOBR_RS30075 at 87.220 kb on - strand, within AZOBR_RS30075 at 87.766 kb on - strand, within AZOBR_RS30075 at 88.136 kb on - strand at 88.279 kb on + strand, within AZOBR_RS30080 at 88.279 kb on + strand, within AZOBR_RS30080 at 88.279 kb on + strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.369 kb on + strand, within AZOBR_RS30080 at 88.370 kb on - strand, within AZOBR_RS30080 at 88.456 kb on + strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.499 kb on - strand, within AZOBR_RS30080 at 88.718 kb on - strand, within AZOBR_RS30080 at 88.810 kb on + strand, within AZOBR_RS30080 at 88.910 kb on - strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.099 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.192 kb on - strand at 89.314 kb on + strand at 89.315 kb on - strand at 89.376 kb on - strand at 89.401 kb on - strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.653 kb on - strand at 89.653 kb on - strand at 89.653 kb on - strand at 90.012 kb on + strand, within AZOBR_RS30085 at 90.012 kb on + strand, within AZOBR_RS30085 at 90.013 kb on - strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.031 kb on - strand, within AZOBR_RS30085 at 90.093 kb on + strand, within AZOBR_RS30085 at 90.094 kb on - strand, within AZOBR_RS30085
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 87,082 - AZOBR_RS30075 0.31 -2.3 87,219 + AZOBR_RS30075 0.41 -1.3 87,220 - AZOBR_RS30075 0.41 -1.7 87,220 - AZOBR_RS30075 0.41 +0.4 87,766 - AZOBR_RS30075 0.80 +0.7 88,136 - +1.3 88,279 + AZOBR_RS30080 0.17 -0.2 88,279 + AZOBR_RS30080 0.17 -0.2 88,279 + AZOBR_RS30080 0.17 -0.1 88,280 - AZOBR_RS30080 0.17 -1.7 88,280 - AZOBR_RS30080 0.17 -2.2 88,280 - AZOBR_RS30080 0.17 -1.4 88,369 + AZOBR_RS30080 0.25 +0.3 88,370 - AZOBR_RS30080 0.25 -0.7 88,456 + AZOBR_RS30080 0.32 -1.0 88,457 - AZOBR_RS30080 0.32 +0.2 88,457 - AZOBR_RS30080 0.32 -0.0 88,457 - AZOBR_RS30080 0.32 +0.6 88,499 - AZOBR_RS30080 0.35 -3.3 88,718 - AZOBR_RS30080 0.53 -0.4 88,810 + AZOBR_RS30080 0.60 -1.3 88,910 - AZOBR_RS30080 0.69 -0.4 89,098 + AZOBR_RS30080 0.84 +2.1 89,098 + AZOBR_RS30080 0.84 +2.2 89,099 - AZOBR_RS30080 0.84 -0.8 89,132 - AZOBR_RS30080 0.87 +2.2 89,132 - AZOBR_RS30080 0.87 +2.2 89,192 - +0.4 89,314 + +1.2 89,315 - +0.4 89,376 - +0.8 89,401 - -1.6 89,652 + +1.9 89,652 + +0.5 89,652 + -0.2 89,653 - -1.8 89,653 - -1.9 89,653 - +2.2 90,012 + AZOBR_RS30085 0.67 +0.4 90,012 + AZOBR_RS30085 0.67 +0.1 90,013 - AZOBR_RS30085 0.67 +0.3 90,030 + AZOBR_RS30085 0.69 +0.2 90,030 + AZOBR_RS30085 0.69 -0.2 90,030 + AZOBR_RS30085 0.69 -0.9 90,030 + AZOBR_RS30085 0.69 +0.3 90,030 + AZOBR_RS30085 0.69 -2.3 90,031 - AZOBR_RS30085 0.70 +0.7 90,093 + AZOBR_RS30085 0.80 -0.2 90,094 - AZOBR_RS30085 0.80 +1.6
Or see this region's nucleotide sequence