Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26520

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26510 and AZOBR_RS26515 overlap by 8 nucleotidesAZOBR_RS26515 and AZOBR_RS26520 are separated by 147 nucleotidesAZOBR_RS26520 and AZOBR_RS26525 are separated by 230 nucleotides AZOBR_RS26510: AZOBR_RS26510 - branched-chain amino acid ABC transporter permease, at 93,061 to 94,857 _RS26510 AZOBR_RS26515: AZOBR_RS26515 - branched-chain amino acid ABC transporter, at 94,850 to 95,572 _RS26515 AZOBR_RS26520: AZOBR_RS26520 - alcohol dehydrogenase, at 95,720 to 96,886 _RS26520 AZOBR_RS26525: AZOBR_RS26525 - putative transcriptional regulator, at 97,117 to 97,962 _RS26525 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2at 94.762 kb on + strandat 94.763 kb on - strandat 94.763 kb on - strandat 94.763 kb on - strandat 94.763 kb on - strandat 94.786 kb on + strandat 94.786 kb on + strandat 94.786 kb on + strandat 94.813 kb on + strandat 94.814 kb on - strandat 94.929 kb on + strand, within AZOBR_RS26515at 95.216 kb on + strand, within AZOBR_RS26515at 95.558 kb on + strandat 95.558 kb on + strandat 95.559 kb on - strandat 95.664 kb on + strandat 95.765 kb on + strandat 95.766 kb on - strandat 96.257 kb on + strand, within AZOBR_RS26520at 96.258 kb on - strand, within AZOBR_RS26520at 96.999 kb on + strandat 97.000 kb on - strandat 97.069 kb on + strandat 97.070 kb on - strandat 97.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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94,762 + -1.5
94,763 - +0.3
94,763 - -0.6
94,763 - -0.1
94,763 - +1.1
94,786 + -0.7
94,786 + -0.6
94,786 + -0.2
94,813 + +0.3
94,814 - -1.5
94,929 + AZOBR_RS26515 0.11 -2.3
95,216 + AZOBR_RS26515 0.51 +0.6
95,558 + +0.8
95,558 + +0.8
95,559 - +0.1
95,664 + +0.1
95,765 + +0.1
95,766 - +0.6
96,257 + AZOBR_RS26520 0.46 +2.3
96,258 - AZOBR_RS26520 0.46 -2.2
96,999 + -2.5
97,000 - +0.1
97,069 + +0.7
97,070 - -1.4
97,078 + -2.5

Or see this region's nucleotide sequence