Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25440

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25435 and AZOBR_RS25440 overlap by 4 nucleotidesAZOBR_RS25440 and AZOBR_RS25445 are separated by 23 nucleotides AZOBR_RS25435: AZOBR_RS25435 - oxidoreductase, at 759,868 to 761,352 _RS25435 AZOBR_RS25440: AZOBR_RS25440 - hypothetical protein, at 761,349 to 761,804 _RS25440 AZOBR_RS25445: AZOBR_RS25445 - peptidase M19, at 761,828 to 762,811 _RS25445 Position (kb) 761 762Strain fitness (log2 ratio) -1 0 1at 760.544 kb on + strand, within AZOBR_RS25435at 760.853 kb on + strand, within AZOBR_RS25435at 760.946 kb on + strand, within AZOBR_RS25435at 760.958 kb on + strand, within AZOBR_RS25435at 760.958 kb on + strand, within AZOBR_RS25435at 760.958 kb on + strand, within AZOBR_RS25435at 761.027 kb on + strand, within AZOBR_RS25435at 761.599 kb on + strand, within AZOBR_RS25440at 761.600 kb on - strand, within AZOBR_RS25440at 762.036 kb on + strand, within AZOBR_RS25445at 762.110 kb on + strand, within AZOBR_RS25445at 762.110 kb on + strand, within AZOBR_RS25445at 762.241 kb on + strand, within AZOBR_RS25445at 762.285 kb on + strand, within AZOBR_RS25445at 762.286 kb on - strand, within AZOBR_RS25445at 762.286 kb on - strand, within AZOBR_RS25445at 762.463 kb on - strand, within AZOBR_RS25445at 762.510 kb on + strand, within AZOBR_RS25445at 762.510 kb on + strand, within AZOBR_RS25445at 762.511 kb on - strand, within AZOBR_RS25445at 762.604 kb on + strand, within AZOBR_RS25445at 762.604 kb on + strand, within AZOBR_RS25445

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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760,544 + AZOBR_RS25435 0.46 +1.1
760,853 + AZOBR_RS25435 0.66 +0.7
760,946 + AZOBR_RS25435 0.73 +0.8
760,958 + AZOBR_RS25435 0.73 -0.1
760,958 + AZOBR_RS25435 0.73 +1.2
760,958 + AZOBR_RS25435 0.73 +0.8
761,027 + AZOBR_RS25435 0.78 +0.5
761,599 + AZOBR_RS25440 0.55 +0.1
761,600 - AZOBR_RS25440 0.55 +0.0
762,036 + AZOBR_RS25445 0.21 -1.0
762,110 + AZOBR_RS25445 0.29 -1.0
762,110 + AZOBR_RS25445 0.29 -0.7
762,241 + AZOBR_RS25445 0.42 +0.0
762,285 + AZOBR_RS25445 0.46 -0.5
762,286 - AZOBR_RS25445 0.47 -0.1
762,286 - AZOBR_RS25445 0.47 -0.3
762,463 - AZOBR_RS25445 0.65 +1.3
762,510 + AZOBR_RS25445 0.69 -0.3
762,510 + AZOBR_RS25445 0.69 -1.4
762,511 - AZOBR_RS25445 0.69 +0.5
762,604 + AZOBR_RS25445 0.79 +1.0
762,604 + AZOBR_RS25445 0.79 -1.7

Or see this region's nucleotide sequence