Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22155

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22150 and AZOBR_RS22155 are separated by 12 nucleotides AZOBR_RS22150: AZOBR_RS22150 - hypothetical protein, at 1,740,932 to 1,741,858 _RS22150 AZOBR_RS22155: AZOBR_RS22155 - conserved exported protein of unknown function, at 1,741,871 to 1,742,680 _RS22155 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1741.025 kb on + strand, within AZOBR_RS22150at 1741.323 kb on - strand, within AZOBR_RS22150at 1741.572 kb on - strand, within AZOBR_RS22150at 1741.598 kb on + strand, within AZOBR_RS22150at 1741.599 kb on - strandat 1741.645 kb on + strand, within AZOBR_RS22150at 1741.646 kb on - strand, within AZOBR_RS22150at 1741.677 kb on - strand, within AZOBR_RS22150at 1741.857 kb on - strandat 1742.438 kb on + strand, within AZOBR_RS22155at 1742.439 kb on - strand, within AZOBR_RS22155at 1742.439 kb on - strand, within AZOBR_RS22155at 1742.837 kb on - strandat 1742.837 kb on - strandat 1742.858 kb on + strandat 1742.858 kb on + strandat 1742.858 kb on + strandat 1742.998 kb on - strandat 1743.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,741,025 + AZOBR_RS22150 0.10 -0.5
1,741,323 - AZOBR_RS22150 0.42 +0.0
1,741,572 - AZOBR_RS22150 0.69 +1.3
1,741,598 + AZOBR_RS22150 0.72 -2.2
1,741,599 - +1.3
1,741,645 + AZOBR_RS22150 0.77 +0.4
1,741,646 - AZOBR_RS22150 0.77 +1.1
1,741,677 - AZOBR_RS22150 0.80 +3.3
1,741,857 - +1.3
1,742,438 + AZOBR_RS22155 0.70 -0.6
1,742,439 - AZOBR_RS22155 0.70 -0.7
1,742,439 - AZOBR_RS22155 0.70 -1.2
1,742,837 - +0.3
1,742,837 - +0.1
1,742,858 + -0.0
1,742,858 + -0.5
1,742,858 + -0.1
1,742,998 - +1.5
1,743,359 - -1.3

Or see this region's nucleotide sequence