Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21650

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21645 and AZOBR_RS21650 are separated by 23 nucleotidesAZOBR_RS21650 and AZOBR_RS21655 are separated by 165 nucleotides AZOBR_RS21645: AZOBR_RS21645 - hypothetical protein, at 1,636,435 to 1,637,820 _RS21645 AZOBR_RS21650: AZOBR_RS21650 - hypothetical protein, at 1,637,844 to 1,638,428 _RS21650 AZOBR_RS21655: AZOBR_RS21655 - N-acetylmuramoyl-L-alanine amidase, at 1,638,594 to 1,639,295 _RS21655 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1637.066 kb on + strand, within AZOBR_RS21645at 1637.150 kb on + strand, within AZOBR_RS21645at 1637.150 kb on + strand, within AZOBR_RS21645at 1637.339 kb on + strand, within AZOBR_RS21645at 1637.549 kb on + strand, within AZOBR_RS21645at 1637.619 kb on - strand, within AZOBR_RS21645at 1637.619 kb on - strand, within AZOBR_RS21645at 1637.860 kb on + strandat 1637.860 kb on + strandat 1637.950 kb on + strand, within AZOBR_RS21650at 1638.255 kb on - strand, within AZOBR_RS21650at 1638.997 kb on + strand, within AZOBR_RS21655

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,637,066 + AZOBR_RS21645 0.46 -1.3
1,637,150 + AZOBR_RS21645 0.52 +0.7
1,637,150 + AZOBR_RS21645 0.52 -3.1
1,637,339 + AZOBR_RS21645 0.65 -0.6
1,637,549 + AZOBR_RS21645 0.80 -1.2
1,637,619 - AZOBR_RS21645 0.85 -0.9
1,637,619 - AZOBR_RS21645 0.85 -0.3
1,637,860 + -1.2
1,637,860 + +3.3
1,637,950 + AZOBR_RS21650 0.18 +2.3
1,638,255 - AZOBR_RS21650 0.70 -0.6
1,638,997 + AZOBR_RS21655 0.57 +0.4

Or see this region's nucleotide sequence