Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21035

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21030 and AZOBR_RS21035 are separated by 103 nucleotidesAZOBR_RS21035 and AZOBR_RS21040 are separated by 55 nucleotides AZOBR_RS21030: AZOBR_RS21030 - MFS transporter, at 1,477,563 to 1,478,774 _RS21030 AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422 _RS21035 AZOBR_RS21040: AZOBR_RS21040 - hypothetical protein, at 1,480,478 to 1,481,515 _RS21040 Position (kb) 1478 1479 1480 1481Strain fitness (log2 ratio) -2 -1 0 1 2at 1478.244 kb on + strand, within AZOBR_RS21030at 1478.244 kb on + strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1479.197 kb on + strand, within AZOBR_RS21035at 1479.198 kb on - strand, within AZOBR_RS21035at 1479.248 kb on + strand, within AZOBR_RS21035at 1479.248 kb on + strand, within AZOBR_RS21035at 1479.249 kb on - strand, within AZOBR_RS21035at 1479.249 kb on - strand, within AZOBR_RS21035at 1479.371 kb on + strand, within AZOBR_RS21035at 1479.372 kb on - strand, within AZOBR_RS21035at 1479.372 kb on - strand, within AZOBR_RS21035at 1479.848 kb on + strand, within AZOBR_RS21035at 1479.848 kb on + strand, within AZOBR_RS21035at 1479.849 kb on - strand, within AZOBR_RS21035at 1480.016 kb on + strandat 1480.017 kb on - strand, within AZOBR_RS21035at 1480.095 kb on - strand, within AZOBR_RS21035at 1480.491 kb on + strandat 1480.491 kb on + strandat 1480.672 kb on - strand, within AZOBR_RS21040at 1480.899 kb on + strand, within AZOBR_RS21040at 1480.899 kb on + strand, within AZOBR_RS21040at 1480.900 kb on - strand, within AZOBR_RS21040at 1481.196 kb on + strand, within AZOBR_RS21040at 1481.358 kb on + strand, within AZOBR_RS21040

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,478,244 + AZOBR_RS21030 0.56 +2.1
1,478,244 + AZOBR_RS21030 0.56 -0.1
1,478,245 - AZOBR_RS21030 0.56 -1.7
1,478,245 - AZOBR_RS21030 0.56 -0.7
1,478,245 - AZOBR_RS21030 0.56 +0.1
1,478,250 + AZOBR_RS21030 0.57 -0.2
1,478,250 + AZOBR_RS21030 0.57 -1.6
1,478,250 + AZOBR_RS21030 0.57 -2.1
1,478,250 + AZOBR_RS21030 0.57 -0.9
1,478,251 - AZOBR_RS21030 0.57 -1.6
1,478,251 - AZOBR_RS21030 0.57 -0.8
1,478,251 - AZOBR_RS21030 0.57 -0.4
1,478,251 - AZOBR_RS21030 0.57 -0.3
1,479,197 + AZOBR_RS21035 0.21 -0.3
1,479,198 - AZOBR_RS21035 0.21 -0.5
1,479,248 + AZOBR_RS21035 0.24 +0.3
1,479,248 + AZOBR_RS21035 0.24 +0.2
1,479,249 - AZOBR_RS21035 0.24 -0.1
1,479,249 - AZOBR_RS21035 0.24 +0.7
1,479,371 + AZOBR_RS21035 0.32 -0.2
1,479,372 - AZOBR_RS21035 0.32 +0.7
1,479,372 - AZOBR_RS21035 0.32 +0.7
1,479,848 + AZOBR_RS21035 0.63 -0.7
1,479,848 + AZOBR_RS21035 0.63 +2.4
1,479,849 - AZOBR_RS21035 0.63 -1.4
1,480,016 + +1.3
1,480,017 - AZOBR_RS21035 0.74 +0.1
1,480,095 - AZOBR_RS21035 0.79 -1.4
1,480,491 + -0.5
1,480,491 + +0.5
1,480,672 - AZOBR_RS21040 0.19 -0.5
1,480,899 + AZOBR_RS21040 0.41 -1.2
1,480,899 + AZOBR_RS21040 0.41 -0.9
1,480,900 - AZOBR_RS21040 0.41 -1.0
1,481,196 + AZOBR_RS21040 0.69 -2.3
1,481,358 + AZOBR_RS21040 0.85 +0.4

Or see this region's nucleotide sequence