Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20650

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20645 and AZOBR_RS20650 are separated by 21 nucleotidesAZOBR_RS20650 and AZOBR_RS20655 are separated by 834 nucleotides AZOBR_RS20645: AZOBR_RS20645 - glutamyl-tRNA(Gln) amidotransferase, at 1,391,560 to 1,393,041 _RS20645 AZOBR_RS20650: AZOBR_RS20650 - glutamyl-tRNA amidotransferase subunit B, at 1,393,063 to 1,394,514 _RS20650 AZOBR_RS20655: AZOBR_RS20655 - histidine kinase, at 1,395,349 to 1,396,659 _RS20655 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2at 1394.560 kb on + strandat 1394.831 kb on - strandat 1394.906 kb on - strandat 1394.906 kb on - strandat 1394.906 kb on - strandat 1395.074 kb on - strandat 1395.343 kb on + strandat 1395.344 kb on - strandat 1395.344 kb on - strandat 1395.344 kb on - strandat 1395.349 kb on + strandat 1395.350 kb on - strandat 1395.350 kb on - strandat 1395.350 kb on - strandat 1395.443 kb on - strandat 1395.443 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,394,560 + +1.8
1,394,831 - -0.8
1,394,906 - -0.8
1,394,906 - -0.0
1,394,906 - -0.0
1,395,074 - +0.7
1,395,343 + -2.4
1,395,344 - +0.5
1,395,344 - +1.5
1,395,344 - -0.1
1,395,349 + -0.8
1,395,350 - -2.6
1,395,350 - -2.7
1,395,350 - +0.5
1,395,443 - +0.6
1,395,443 - +0.9

Or see this region's nucleotide sequence