Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19350

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19340 and AZOBR_RS19345 are separated by 64 nucleotidesAZOBR_RS19345 and AZOBR_RS19350 are separated by 579 nucleotidesAZOBR_RS19350 and AZOBR_RS19355 are separated by 129 nucleotides AZOBR_RS19340: AZOBR_RS19340 - long-chain fatty acid--CoA ligase, at 1,108,562 to 1,110,121 _RS19340 AZOBR_RS19345: AZOBR_RS19345 - acyl carrier protein, at 1,110,186 to 1,110,449 _RS19345 AZOBR_RS19350: AZOBR_RS19350 - polysaccharide deacetylase, at 1,111,029 to 1,111,877 _RS19350 AZOBR_RS19355: AZOBR_RS19355 - glycosyl transferase family 1, at 1,112,007 to 1,112,972 _RS19355 Position (kb) 1111 1112Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1110.668 kb on - strandat 1110.679 kb on + strandat 1110.776 kb on + strandat 1110.776 kb on + strandat 1110.776 kb on + strandat 1111.576 kb on + strand, within AZOBR_RS19350at 1111.576 kb on + strand, within AZOBR_RS19350at 1111.576 kb on + strand, within AZOBR_RS19350at 1111.576 kb on + strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.577 kb on - strand, within AZOBR_RS19350at 1111.792 kb on + strand, within AZOBR_RS19350at 1111.793 kb on - strandat 1111.793 kb on - strandat 1111.911 kb on + strandat 1112.713 kb on + strand, within AZOBR_RS19355at 1112.794 kb on + strand, within AZOBR_RS19355at 1112.794 kb on + strand, within AZOBR_RS19355at 1112.794 kb on + strand, within AZOBR_RS19355at 1112.795 kb on - strand, within AZOBR_RS19355at 1112.795 kb on - strand, within AZOBR_RS19355

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,110,668 - -0.3
1,110,679 + -5.0
1,110,776 + -0.7
1,110,776 + -1.4
1,110,776 + +0.0
1,111,576 + AZOBR_RS19350 0.64 -2.5
1,111,576 + AZOBR_RS19350 0.64 -2.5
1,111,576 + AZOBR_RS19350 0.64 +1.2
1,111,576 + AZOBR_RS19350 0.64 -1.2
1,111,577 - AZOBR_RS19350 0.65 -2.0
1,111,577 - AZOBR_RS19350 0.65 +2.8
1,111,577 - AZOBR_RS19350 0.65 +0.5
1,111,577 - AZOBR_RS19350 0.65 +1.7
1,111,577 - AZOBR_RS19350 0.65 +0.9
1,111,577 - AZOBR_RS19350 0.65 -2.0
1,111,792 + AZOBR_RS19350 0.90 +0.2
1,111,793 - +0.2
1,111,793 - -0.8
1,111,911 + +1.3
1,112,713 + AZOBR_RS19355 0.73 +0.4
1,112,794 + AZOBR_RS19355 0.81 -0.2
1,112,794 + AZOBR_RS19355 0.81 +0.0
1,112,794 + AZOBR_RS19355 0.81 +0.5
1,112,795 - AZOBR_RS19355 0.82 +3.4
1,112,795 - AZOBR_RS19355 0.82 +2.3

Or see this region's nucleotide sequence