Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19345

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19340 and AZOBR_RS19345 are separated by 64 nucleotidesAZOBR_RS19345 and AZOBR_RS19350 are separated by 579 nucleotides AZOBR_RS19340: AZOBR_RS19340 - long-chain fatty acid--CoA ligase, at 1,108,562 to 1,110,121 _RS19340 AZOBR_RS19345: AZOBR_RS19345 - acyl carrier protein, at 1,110,186 to 1,110,449 _RS19345 AZOBR_RS19350: AZOBR_RS19350 - polysaccharide deacetylase, at 1,111,029 to 1,111,877 _RS19350 Position (kb) 1110 1111Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1109.263 kb on - strand, within AZOBR_RS19340at 1109.263 kb on - strand, within AZOBR_RS19340at 1109.514 kb on + strand, within AZOBR_RS19340at 1109.515 kb on - strand, within AZOBR_RS19340at 1109.515 kb on - strand, within AZOBR_RS19340at 1109.515 kb on - strand, within AZOBR_RS19340at 1109.598 kb on + strand, within AZOBR_RS19340at 1109.598 kb on + strand, within AZOBR_RS19340at 1109.599 kb on - strand, within AZOBR_RS19340at 1109.599 kb on - strand, within AZOBR_RS19340at 1109.599 kb on - strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.841 kb on + strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.842 kb on - strand, within AZOBR_RS19340at 1109.883 kb on + strand, within AZOBR_RS19340at 1109.883 kb on + strand, within AZOBR_RS19340at 1109.883 kb on + strand, within AZOBR_RS19340at 1109.883 kb on + strand, within AZOBR_RS19340at 1109.925 kb on + strand, within AZOBR_RS19340at 1109.926 kb on - strand, within AZOBR_RS19340at 1109.926 kb on - strand, within AZOBR_RS19340at 1110.668 kb on - strandat 1110.679 kb on + strandat 1110.776 kb on + strandat 1110.776 kb on + strandat 1110.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,109,263 - AZOBR_RS19340 0.45 -0.1
1,109,263 - AZOBR_RS19340 0.45 -1.4
1,109,514 + AZOBR_RS19340 0.61 -0.6
1,109,515 - AZOBR_RS19340 0.61 -3.1
1,109,515 - AZOBR_RS19340 0.61 +0.2
1,109,515 - AZOBR_RS19340 0.61 -1.7
1,109,598 + AZOBR_RS19340 0.66 -1.0
1,109,598 + AZOBR_RS19340 0.66 -0.5
1,109,599 - AZOBR_RS19340 0.66 -0.5
1,109,599 - AZOBR_RS19340 0.66 -2.6
1,109,599 - AZOBR_RS19340 0.66 -1.5
1,109,841 + AZOBR_RS19340 0.82 +0.1
1,109,841 + AZOBR_RS19340 0.82 -0.1
1,109,841 + AZOBR_RS19340 0.82 +1.6
1,109,841 + AZOBR_RS19340 0.82 +0.1
1,109,841 + AZOBR_RS19340 0.82 -1.3
1,109,841 + AZOBR_RS19340 0.82 -0.2
1,109,842 - AZOBR_RS19340 0.82 -5.1
1,109,842 - AZOBR_RS19340 0.82 -0.0
1,109,842 - AZOBR_RS19340 0.82 -0.5
1,109,842 - AZOBR_RS19340 0.82 -1.1
1,109,842 - AZOBR_RS19340 0.82 -0.8
1,109,842 - AZOBR_RS19340 0.82 -0.6
1,109,842 - AZOBR_RS19340 0.82 -0.4
1,109,883 + AZOBR_RS19340 0.85 -0.3
1,109,883 + AZOBR_RS19340 0.85 -3.2
1,109,883 + AZOBR_RS19340 0.85 -2.2
1,109,883 + AZOBR_RS19340 0.85 -0.1
1,109,925 + AZOBR_RS19340 0.87 -0.6
1,109,926 - AZOBR_RS19340 0.87 +0.1
1,109,926 - AZOBR_RS19340 0.87 +1.4
1,110,668 - -0.3
1,110,679 + -5.0
1,110,776 + -0.7
1,110,776 + -1.4
1,110,776 + +0.0

Or see this region's nucleotide sequence