Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16420 and AZOBR_RS16425 are separated by 217 nucleotides AZOBR_RS16425 and AZOBR_RS16430 are separated by 140 nucleotides
AZOBR_RS16420: AZOBR_RS16420 - excinuclease ABC subunit B, at 432,203 to 434,341
_RS16420
AZOBR_RS16425: AZOBR_RS16425 - branched-chain amino acid aminotransferase, at 434,559 to 435,431
_RS16425
AZOBR_RS16430: AZOBR_RS16430 - MarR family transcriptional regulator, at 435,572 to 436,084
_RS16430
Position (kb) 434
435
436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 433.746 kb on + strand, within AZOBR_RS16420 at 433.746 kb on + strand, within AZOBR_RS16420 at 433.747 kb on - strand, within AZOBR_RS16420 at 433.747 kb on - strand, within AZOBR_RS16420 at 433.828 kb on - strand, within AZOBR_RS16420 at 433.851 kb on + strand, within AZOBR_RS16420 at 433.852 kb on - strand, within AZOBR_RS16420 at 433.852 kb on - strand, within AZOBR_RS16420 at 434.382 kb on + strand at 434.382 kb on + strand at 434.382 kb on + strand at 434.383 kb on - strand at 434.383 kb on - strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.384 kb on + strand at 434.385 kb on - strand at 434.385 kb on - strand at 434.480 kb on + strand at 434.480 kb on + strand at 434.481 kb on - strand at 434.481 kb on - strand at 434.582 kb on - strand at 434.785 kb on - strand, within AZOBR_RS16425 at 434.896 kb on + strand, within AZOBR_RS16425 at 434.941 kb on + strand, within AZOBR_RS16425 at 434.941 kb on + strand, within AZOBR_RS16425 at 434.942 kb on - strand, within AZOBR_RS16425 at 434.942 kb on - strand, within AZOBR_RS16425 at 435.046 kb on + strand, within AZOBR_RS16425 at 435.047 kb on - strand, within AZOBR_RS16425 at 435.145 kb on + strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.146 kb on - strand, within AZOBR_RS16425 at 435.293 kb on - strand, within AZOBR_RS16425 at 435.388 kb on + strand at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.650 kb on + strand, within AZOBR_RS16430 at 435.651 kb on - strand, within AZOBR_RS16430 at 435.657 kb on - strand, within AZOBR_RS16430 at 435.731 kb on + strand, within AZOBR_RS16430 at 435.732 kb on - strand, within AZOBR_RS16430 at 436.296 kb on + strand at 436.296 kb on + strand at 436.296 kb on + strand at 436.339 kb on + strand at 436.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 433,746 + AZOBR_RS16420 0.72 -0.8 433,746 + AZOBR_RS16420 0.72 +0.2 433,747 - AZOBR_RS16420 0.72 -0.8 433,747 - AZOBR_RS16420 0.72 -1.2 433,828 - AZOBR_RS16420 0.76 +0.3 433,851 + AZOBR_RS16420 0.77 -2.3 433,852 - AZOBR_RS16420 0.77 -2.0 433,852 - AZOBR_RS16420 0.77 +0.3 434,382 + -2.2 434,382 + +0.5 434,382 + +1.1 434,383 - +0.6 434,383 - +0.6 434,384 + +0.1 434,384 + -1.2 434,384 + -2.4 434,384 + +0.7 434,385 - -0.4 434,385 - -0.5 434,480 + -2.9 434,480 + +0.4 434,481 - +0.7 434,481 - -0.2 434,582 - +0.2 434,785 - AZOBR_RS16425 0.26 -0.9 434,896 + AZOBR_RS16425 0.39 +2.1 434,941 + AZOBR_RS16425 0.44 -3.0 434,941 + AZOBR_RS16425 0.44 +0.0 434,942 - AZOBR_RS16425 0.44 +0.2 434,942 - AZOBR_RS16425 0.44 -1.4 435,046 + AZOBR_RS16425 0.56 -0.4 435,047 - AZOBR_RS16425 0.56 -3.7 435,145 + AZOBR_RS16425 0.67 -2.2 435,146 - AZOBR_RS16425 0.67 +0.2 435,146 - AZOBR_RS16425 0.67 -1.5 435,146 - AZOBR_RS16425 0.67 -0.9 435,146 - AZOBR_RS16425 0.67 +0.1 435,146 - AZOBR_RS16425 0.67 -4.0 435,293 - AZOBR_RS16425 0.84 -2.7 435,388 + -0.1 435,650 + AZOBR_RS16430 0.15 +1.1 435,650 + AZOBR_RS16430 0.15 -0.6 435,650 + AZOBR_RS16430 0.15 -0.6 435,650 + AZOBR_RS16430 0.15 +2.8 435,650 + AZOBR_RS16430 0.15 -1.5 435,651 - AZOBR_RS16430 0.15 +0.6 435,657 - AZOBR_RS16430 0.17 -0.5 435,731 + AZOBR_RS16430 0.31 -1.4 435,732 - AZOBR_RS16430 0.31 +2.0 436,296 + -0.8 436,296 + -1.9 436,296 + +2.2 436,339 + +0.6 436,340 - -2.3
Or see this region's nucleotide sequence