Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16405 and AZOBR_RS16410 are separated by 184 nucleotides AZOBR_RS16410 and AZOBR_RS16415 are separated by 613 nucleotides AZOBR_RS16415 and AZOBR_RS16420 are separated by 63 nucleotides
AZOBR_RS16405: AZOBR_RS16405 - hypothetical protein, at 429,453 to 430,568
_RS16405
AZOBR_RS16410: AZOBR_RS16410 - hypothetical protein, at 430,753 to 430,941
_RS16410
AZOBR_RS16415: AZOBR_RS16415 - hypothetical protein, at 431,555 to 432,139
_RS16415
AZOBR_RS16420: AZOBR_RS16420 - excinuclease ABC subunit B, at 432,203 to 434,341
_RS16420
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 430.639 kb on + strand at 430.640 kb on - strand at 430.808 kb on + strand, within AZOBR_RS16410 at 430.808 kb on + strand, within AZOBR_RS16410 at 430.809 kb on - strand, within AZOBR_RS16410 at 430.809 kb on - strand, within AZOBR_RS16410 at 430.812 kb on - strand, within AZOBR_RS16410 at 430.823 kb on + strand, within AZOBR_RS16410 at 430.845 kb on - strand, within AZOBR_RS16410 at 430.847 kb on + strand, within AZOBR_RS16410 at 430.869 kb on - strand, within AZOBR_RS16410 at 430.869 kb on - strand, within AZOBR_RS16410 at 430.871 kb on + strand, within AZOBR_RS16410 at 430.871 kb on + strand, within AZOBR_RS16410 at 430.872 kb on - strand, within AZOBR_RS16410 at 430.878 kb on - strand, within AZOBR_RS16410 at 430.883 kb on + strand, within AZOBR_RS16410 at 430.884 kb on - strand, within AZOBR_RS16410 at 430.884 kb on - strand, within AZOBR_RS16410 at 430.904 kb on + strand, within AZOBR_RS16410 at 430.934 kb on + strand at 430.935 kb on - strand at 431.025 kb on - strand at 431.168 kb on + strand at 431.345 kb on - strand at 431.345 kb on - strand at 431.373 kb on - strand at 431.402 kb on + strand at 431.403 kb on - strand at 431.409 kb on + strand at 431.409 kb on + strand at 431.420 kb on - strand at 431.459 kb on + strand at 431.465 kb on + strand at 431.631 kb on - strand, within AZOBR_RS16415 at 431.789 kb on + strand, within AZOBR_RS16415 at 431.790 kb on - strand, within AZOBR_RS16415 at 431.790 kb on - strand, within AZOBR_RS16415 at 432.060 kb on - strand, within AZOBR_RS16415 at 432.487 kb on - strand, within AZOBR_RS16420 at 432.555 kb on + strand, within AZOBR_RS16420 at 432.601 kb on - strand, within AZOBR_RS16420 at 432.630 kb on + strand, within AZOBR_RS16420 at 432.705 kb on + strand, within AZOBR_RS16420 at 432.705 kb on + strand, within AZOBR_RS16420 at 432.848 kb on + strand, within AZOBR_RS16420 at 432.848 kb on + strand, within AZOBR_RS16420 at 432.849 kb on - strand, within AZOBR_RS16420 at 432.864 kb on + strand, within AZOBR_RS16420 at 432.864 kb on + strand, within AZOBR_RS16420 at 432.865 kb on - strand, within AZOBR_RS16420 at 432.894 kb on + strand, within AZOBR_RS16420 at 432.895 kb on - strand, within AZOBR_RS16420
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 430,639 + -0.0 430,640 - +2.8 430,808 + AZOBR_RS16410 0.29 -1.5 430,808 + AZOBR_RS16410 0.29 +1.4 430,809 - AZOBR_RS16410 0.30 +0.5 430,809 - AZOBR_RS16410 0.30 -0.6 430,812 - AZOBR_RS16410 0.31 -0.2 430,823 + AZOBR_RS16410 0.37 +1.5 430,845 - AZOBR_RS16410 0.49 +0.3 430,847 + AZOBR_RS16410 0.50 -0.7 430,869 - AZOBR_RS16410 0.61 -0.2 430,869 - AZOBR_RS16410 0.61 -0.7 430,871 + AZOBR_RS16410 0.62 +3.2 430,871 + AZOBR_RS16410 0.62 -1.4 430,872 - AZOBR_RS16410 0.63 +0.1 430,878 - AZOBR_RS16410 0.66 +1.6 430,883 + AZOBR_RS16410 0.69 +0.1 430,884 - AZOBR_RS16410 0.69 +1.4 430,884 - AZOBR_RS16410 0.69 +1.3 430,904 + AZOBR_RS16410 0.80 -0.2 430,934 + +0.7 430,935 - -3.1 431,025 - -1.5 431,168 + -1.7 431,345 - +1.3 431,345 - +0.0 431,373 - -0.1 431,402 + +0.3 431,403 - +0.3 431,409 + -0.8 431,409 + +2.2 431,420 - +1.4 431,459 + +0.7 431,465 + +0.7 431,631 - AZOBR_RS16415 0.13 +2.2 431,789 + AZOBR_RS16415 0.40 -3.4 431,790 - AZOBR_RS16415 0.40 +2.2 431,790 - AZOBR_RS16415 0.40 -1.4 432,060 - AZOBR_RS16415 0.86 +1.2 432,487 - AZOBR_RS16420 0.13 -0.6 432,555 + AZOBR_RS16420 0.16 +0.6 432,601 - AZOBR_RS16420 0.19 -2.7 432,630 + AZOBR_RS16420 0.20 -1.2 432,705 + AZOBR_RS16420 0.23 +1.2 432,705 + AZOBR_RS16420 0.23 +2.2 432,848 + AZOBR_RS16420 0.30 +0.2 432,848 + AZOBR_RS16420 0.30 -1.6 432,849 - AZOBR_RS16420 0.30 -2.2 432,864 + AZOBR_RS16420 0.31 +1.2 432,864 + AZOBR_RS16420 0.31 +0.4 432,865 - AZOBR_RS16420 0.31 -0.1 432,894 + AZOBR_RS16420 0.32 -0.0 432,895 - AZOBR_RS16420 0.32 +0.9
Or see this region's nucleotide sequence