Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13080

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13075 and AZOBR_RS13080 are separated by 309 nucleotidesAZOBR_RS13080 and AZOBR_RS13085 overlap by 4 nucleotides AZOBR_RS13075: AZOBR_RS13075 - sulfonate ABC transporter ATP-binding protein, at 2,759,844 to 2,760,596 _RS13075 AZOBR_RS13080: AZOBR_RS13080 - putative MFS superfamily multidrug transport protein, at 2,760,906 to 2,762,150 _RS13080 AZOBR_RS13085: AZOBR_RS13085 - putative sulfate ester transport system substrate-binding protein, at 2,762,147 to 2,763,202 _RS13085 Position (kb) 2760 2761 2762 2763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2760.030 kb on + strand, within AZOBR_RS13075at 2760.031 kb on - strand, within AZOBR_RS13075at 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.632 kb on - strandat 2760.632 kb on - strandat 2760.632 kb on - strandat 2761.024 kb on - strandat 2761.260 kb on + strand, within AZOBR_RS13080at 2761.260 kb on + strand, within AZOBR_RS13080at 2761.261 kb on - strand, within AZOBR_RS13080at 2761.261 kb on - strand, within AZOBR_RS13080at 2761.404 kb on + strand, within AZOBR_RS13080at 2761.404 kb on + strand, within AZOBR_RS13080at 2761.405 kb on - strand, within AZOBR_RS13080at 2761.405 kb on - strand, within AZOBR_RS13080at 2761.566 kb on + strand, within AZOBR_RS13080at 2761.567 kb on - strand, within AZOBR_RS13080at 2762.354 kb on + strand, within AZOBR_RS13085at 2762.354 kb on + strand, within AZOBR_RS13085at 2762.354 kb on + strand, within AZOBR_RS13085at 2762.354 kb on + strand, within AZOBR_RS13085at 2762.355 kb on - strand, within AZOBR_RS13085at 2762.355 kb on - strand, within AZOBR_RS13085at 2762.355 kb on - strand, within AZOBR_RS13085at 2762.355 kb on - strand, within AZOBR_RS13085at 2762.420 kb on + strand, within AZOBR_RS13085at 2762.420 kb on + strand, within AZOBR_RS13085at 2762.785 kb on + strand, within AZOBR_RS13085at 2762.972 kb on + strand, within AZOBR_RS13085at 2762.973 kb on - strand, within AZOBR_RS13085at 2763.116 kb on + strandat 2763.116 kb on + strandat 2763.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,760,030 + AZOBR_RS13075 0.25 -2.4
2,760,031 - AZOBR_RS13075 0.25 -0.8
2,760,631 + +0.0
2,760,631 + +1.0
2,760,631 + -1.3
2,760,631 + +2.7
2,760,631 + -1.1
2,760,631 + +1.3
2,760,632 - +1.7
2,760,632 - +0.4
2,760,632 - +0.4
2,761,024 - -0.8
2,761,260 + AZOBR_RS13080 0.28 +0.7
2,761,260 + AZOBR_RS13080 0.28 -0.3
2,761,261 - AZOBR_RS13080 0.29 -2.2
2,761,261 - AZOBR_RS13080 0.29 +1.3
2,761,404 + AZOBR_RS13080 0.40 +0.5
2,761,404 + AZOBR_RS13080 0.40 -0.1
2,761,405 - AZOBR_RS13080 0.40 -0.9
2,761,405 - AZOBR_RS13080 0.40 -0.2
2,761,566 + AZOBR_RS13080 0.53 -1.1
2,761,567 - AZOBR_RS13080 0.53 -2.0
2,762,354 + AZOBR_RS13085 0.20 -0.3
2,762,354 + AZOBR_RS13085 0.20 -2.2
2,762,354 + AZOBR_RS13085 0.20 -0.2
2,762,354 + AZOBR_RS13085 0.20 -2.9
2,762,355 - AZOBR_RS13085 0.20 -2.4
2,762,355 - AZOBR_RS13085 0.20 -1.4
2,762,355 - AZOBR_RS13085 0.20 -0.4
2,762,355 - AZOBR_RS13085 0.20 +2.1
2,762,420 + AZOBR_RS13085 0.26 +0.5
2,762,420 + AZOBR_RS13085 0.26 +0.1
2,762,785 + AZOBR_RS13085 0.60 +1.7
2,762,972 + AZOBR_RS13085 0.78 -0.2
2,762,973 - AZOBR_RS13085 0.78 -0.5
2,763,116 + -0.7
2,763,116 + +0.1
2,763,116 + -0.2

Or see this region's nucleotide sequence