Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13070

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13070 and AZOBR_RS13075 are separated by 28 nucleotides AZOBR_RS13070: AZOBR_RS13070 - taurine ABC transporter permease, at 2,759,069 to 2,759,815 _RS13070 AZOBR_RS13075: AZOBR_RS13075 - sulfonate ABC transporter ATP-binding protein, at 2,759,844 to 2,760,596 _RS13075 Position (kb) 2759 2760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2758.522 kb on + strandat 2758.522 kb on + strandat 2758.522 kb on + strandat 2758.522 kb on + strandat 2758.523 kb on - strandat 2759.367 kb on - strand, within AZOBR_RS13070at 2759.609 kb on + strand, within AZOBR_RS13070at 2759.610 kb on - strand, within AZOBR_RS13070at 2759.889 kb on + strandat 2759.889 kb on + strandat 2759.889 kb on + strandat 2759.889 kb on + strandat 2760.030 kb on + strand, within AZOBR_RS13075at 2760.031 kb on - strand, within AZOBR_RS13075at 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.631 kb on + strandat 2760.632 kb on - strandat 2760.632 kb on - strandat 2760.632 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,758,522 + -0.7
2,758,522 + +0.5
2,758,522 + -0.2
2,758,522 + -0.3
2,758,523 - -0.1
2,759,367 - AZOBR_RS13070 0.40 +0.1
2,759,609 + AZOBR_RS13070 0.72 +1.2
2,759,610 - AZOBR_RS13070 0.72 +0.7
2,759,889 + -3.1
2,759,889 + +1.1
2,759,889 + -0.1
2,759,889 + -0.4
2,760,030 + AZOBR_RS13075 0.25 -2.4
2,760,031 - AZOBR_RS13075 0.25 -0.8
2,760,631 + +0.0
2,760,631 + +1.0
2,760,631 + -1.3
2,760,631 + +2.7
2,760,631 + -1.1
2,760,631 + +1.3
2,760,632 - +1.7
2,760,632 - +0.4
2,760,632 - +0.4

Or see this region's nucleotide sequence