Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12520

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12515 and AZOBR_RS12520 are separated by 151 nucleotides AZOBR_RS12515: AZOBR_RS12515 - hypothetical protein, at 2,638,679 to 2,639,743 _RS12515 AZOBR_RS12520: AZOBR_RS12520 - hypothetical protein, at 2,639,895 to 2,640,377 _RS12520 Position (kb) 2639 2640 2641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2639.071 kb on + strand, within AZOBR_RS12515at 2639.071 kb on + strand, within AZOBR_RS12515at 2639.174 kb on + strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.175 kb on - strand, within AZOBR_RS12515at 2639.390 kb on + strand, within AZOBR_RS12515at 2639.390 kb on + strand, within AZOBR_RS12515at 2639.681 kb on + strandat 2639.681 kb on + strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.682 kb on - strandat 2639.903 kb on + strandat 2639.904 kb on - strandat 2640.455 kb on + strandat 2640.455 kb on + strandat 2640.456 kb on - strandat 2640.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,639,071 + AZOBR_RS12515 0.37 +1.5
2,639,071 + AZOBR_RS12515 0.37 -1.8
2,639,174 + AZOBR_RS12515 0.46 -0.9
2,639,175 - AZOBR_RS12515 0.47 -0.7
2,639,175 - AZOBR_RS12515 0.47 +0.4
2,639,175 - AZOBR_RS12515 0.47 +1.3
2,639,175 - AZOBR_RS12515 0.47 -2.9
2,639,175 - AZOBR_RS12515 0.47 +0.4
2,639,390 + AZOBR_RS12515 0.67 +1.1
2,639,390 + AZOBR_RS12515 0.67 +0.5
2,639,681 + +2.1
2,639,681 + +1.1
2,639,682 - -0.3
2,639,682 - +1.6
2,639,682 - -2.3
2,639,682 - +0.5
2,639,682 - +0.1
2,639,903 + +1.5
2,639,904 - -0.1
2,640,455 + +0.1
2,640,455 + -1.9
2,640,456 - -0.8
2,640,456 - +0.7

Or see this region's nucleotide sequence