Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12015

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12005 and AZOBR_RS12010 are separated by 125 nucleotidesAZOBR_RS12010 and AZOBR_RS12015 are separated by 220 nucleotidesAZOBR_RS12015 and AZOBR_RS12020 are separated by 20 nucleotidesAZOBR_RS12020 and AZOBR_RS12025 are separated by 23 nucleotides AZOBR_RS12005: AZOBR_RS12005 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,523,545 to 2,524,186 _RS12005 AZOBR_RS12010: AZOBR_RS12010 - ribonuclease T, at 2,524,312 to 2,524,965 _RS12010 AZOBR_RS12015: AZOBR_RS12015 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,525,186 to 2,526,529 _RS12015 AZOBR_RS12020: AZOBR_RS12020 - acetyl-CoA carboxylase, at 2,526,550 to 2,526,999 _RS12020 AZOBR_RS12025: AZOBR_RS12025 - 3-dehydroquinate dehydratase, at 2,527,023 to 2,527,472 _RS12025 Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -3 -2 -1 0 1at 2524.196 kb on + strandat 2524.197 kb on + strandat 2524.197 kb on - strandat 2524.228 kb on + strandat 2524.229 kb on - strandat 2524.415 kb on - strand, within AZOBR_RS12010at 2524.415 kb on - strand, within AZOBR_RS12010at 2524.415 kb on - strand, within AZOBR_RS12010at 2524.415 kb on - strand, within AZOBR_RS12010at 2524.417 kb on + strand, within AZOBR_RS12010at 2524.417 kb on + strand, within AZOBR_RS12010at 2524.418 kb on - strand, within AZOBR_RS12010at 2524.418 kb on - strand, within AZOBR_RS12010at 2524.538 kb on - strand, within AZOBR_RS12010at 2524.538 kb on - strand, within AZOBR_RS12010at 2524.538 kb on - strand, within AZOBR_RS12010at 2525.187 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,524,196 + +0.1
2,524,197 + -0.9
2,524,197 - -0.4
2,524,228 + -0.9
2,524,229 - -2.4
2,524,415 - AZOBR_RS12010 0.16 +1.5
2,524,415 - AZOBR_RS12010 0.16 +1.6
2,524,415 - AZOBR_RS12010 0.16 -0.5
2,524,415 - AZOBR_RS12010 0.16 +0.9
2,524,417 + AZOBR_RS12010 0.16 +1.4
2,524,417 + AZOBR_RS12010 0.16 +0.7
2,524,418 - AZOBR_RS12010 0.16 -3.5
2,524,418 - AZOBR_RS12010 0.16 +0.3
2,524,538 - AZOBR_RS12010 0.35 -1.1
2,524,538 - AZOBR_RS12010 0.35 +0.5
2,524,538 - AZOBR_RS12010 0.35 +0.2
2,525,187 + +1.1

Or see this region's nucleotide sequence