Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10620

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10615 and AZOBR_RS10620 are separated by 330 nucleotidesAZOBR_RS10620 and AZOBR_RS10625 are separated by 231 nucleotides AZOBR_RS10615: AZOBR_RS10615 - exported protein of unknown function, at 2,229,881 to 2,230,534 _RS10615 AZOBR_RS10620: AZOBR_RS10620 - membrane protein, at 2,230,865 to 2,231,029 _RS10620 AZOBR_RS10625: AZOBR_RS10625 - RNA polymerase sigma-70 factor, at 2,231,261 to 2,231,749 _RS10625 Position (kb) 2230 2231 2232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2229.966 kb on + strand, within AZOBR_RS10615at 2229.966 kb on + strand, within AZOBR_RS10615at 2229.967 kb on - strand, within AZOBR_RS10615at 2229.967 kb on - strand, within AZOBR_RS10615at 2229.967 kb on - strand, within AZOBR_RS10615at 2230.023 kb on + strand, within AZOBR_RS10615at 2230.023 kb on + strand, within AZOBR_RS10615at 2230.023 kb on + strand, within AZOBR_RS10615at 2230.023 kb on + strand, within AZOBR_RS10615at 2230.024 kb on - strand, within AZOBR_RS10615at 2230.218 kb on + strand, within AZOBR_RS10615at 2230.218 kb on + strand, within AZOBR_RS10615at 2230.219 kb on - strand, within AZOBR_RS10615at 2230.219 kb on - strand, within AZOBR_RS10615at 2230.236 kb on + strand, within AZOBR_RS10615at 2230.236 kb on + strand, within AZOBR_RS10615at 2230.236 kb on + strand, within AZOBR_RS10615at 2230.237 kb on - strand, within AZOBR_RS10615at 2230.237 kb on - strand, within AZOBR_RS10615at 2230.237 kb on - strand, within AZOBR_RS10615at 2230.254 kb on + strand, within AZOBR_RS10615at 2230.254 kb on + strand, within AZOBR_RS10615at 2230.254 kb on + strand, within AZOBR_RS10615at 2230.255 kb on - strand, within AZOBR_RS10615at 2230.255 kb on - strand, within AZOBR_RS10615at 2230.435 kb on - strand, within AZOBR_RS10615at 2230.462 kb on - strand, within AZOBR_RS10615at 2230.462 kb on - strand, within AZOBR_RS10615at 2230.724 kb on + strandat 2231.216 kb on - strandat 2231.221 kb on + strandat 2231.379 kb on + strand, within AZOBR_RS10625at 2231.380 kb on - strand, within AZOBR_RS10625

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,229,966 + AZOBR_RS10615 0.13 -0.6
2,229,966 + AZOBR_RS10615 0.13 +0.5
2,229,967 - AZOBR_RS10615 0.13 +1.0
2,229,967 - AZOBR_RS10615 0.13 -0.6
2,229,967 - AZOBR_RS10615 0.13 +1.0
2,230,023 + AZOBR_RS10615 0.22 -1.1
2,230,023 + AZOBR_RS10615 0.22 -0.8
2,230,023 + AZOBR_RS10615 0.22 +0.2
2,230,023 + AZOBR_RS10615 0.22 -0.3
2,230,024 - AZOBR_RS10615 0.22 -0.2
2,230,218 + AZOBR_RS10615 0.52 -2.7
2,230,218 + AZOBR_RS10615 0.52 -0.8
2,230,219 - AZOBR_RS10615 0.52 -0.0
2,230,219 - AZOBR_RS10615 0.52 -1.3
2,230,236 + AZOBR_RS10615 0.54 +0.2
2,230,236 + AZOBR_RS10615 0.54 -0.0
2,230,236 + AZOBR_RS10615 0.54 -0.5
2,230,237 - AZOBR_RS10615 0.54 +2.8
2,230,237 - AZOBR_RS10615 0.54 -0.3
2,230,237 - AZOBR_RS10615 0.54 +1.0
2,230,254 + AZOBR_RS10615 0.57 +0.0
2,230,254 + AZOBR_RS10615 0.57 -1.0
2,230,254 + AZOBR_RS10615 0.57 -2.8
2,230,255 - AZOBR_RS10615 0.57 +0.6
2,230,255 - AZOBR_RS10615 0.57 -0.0
2,230,435 - AZOBR_RS10615 0.85 -0.3
2,230,462 - AZOBR_RS10615 0.89 -0.9
2,230,462 - AZOBR_RS10615 0.89 +1.4
2,230,724 + +0.3
2,231,216 - +1.5
2,231,221 + +0.4
2,231,379 + AZOBR_RS10625 0.24 +0.5
2,231,380 - AZOBR_RS10625 0.24 -0.2

Or see this region's nucleotide sequence