Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10605

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10600 and AZOBR_RS10605 are separated by 39 nucleotidesAZOBR_RS10605 and AZOBR_RS10610 are separated by 217 nucleotides AZOBR_RS10600: AZOBR_RS10600 - peptidase C69, at 2,225,572 to 2,227,005 _RS10600 AZOBR_RS10605: AZOBR_RS10605 - amino acid-binding protein, at 2,227,045 to 2,227,569 _RS10605 AZOBR_RS10610: AZOBR_RS10610 - hypothetical protein, at 2,227,787 to 2,229,862 _RS10610 Position (kb) 2227 2228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2226.196 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.205 kb on + strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.206 kb on - strand, within AZOBR_RS10600at 2226.550 kb on + strand, within AZOBR_RS10600at 2226.673 kb on + strand, within AZOBR_RS10600at 2226.716 kb on - strand, within AZOBR_RS10600at 2226.787 kb on + strand, within AZOBR_RS10600at 2226.787 kb on + strand, within AZOBR_RS10600at 2227.457 kb on - strand, within AZOBR_RS10605at 2227.457 kb on - strand, within AZOBR_RS10605at 2227.568 kb on - strandat 2227.568 kb on - strandat 2228.027 kb on + strand, within AZOBR_RS10610at 2228.028 kb on - strand, within AZOBR_RS10610at 2228.180 kb on + strand, within AZOBR_RS10610at 2228.180 kb on + strand, within AZOBR_RS10610at 2228.180 kb on + strand, within AZOBR_RS10610at 2228.181 kb on - strand, within AZOBR_RS10610at 2228.253 kb on - strand, within AZOBR_RS10610at 2228.426 kb on + strand, within AZOBR_RS10610at 2228.426 kb on + strand, within AZOBR_RS10610at 2228.427 kb on - strand, within AZOBR_RS10610

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,226,196 + AZOBR_RS10600 0.44 -0.0
2,226,205 + AZOBR_RS10600 0.44 +1.7
2,226,205 + AZOBR_RS10600 0.44 -0.9
2,226,205 + AZOBR_RS10600 0.44 -3.1
2,226,205 + AZOBR_RS10600 0.44 +0.7
2,226,206 - AZOBR_RS10600 0.44 +0.4
2,226,206 - AZOBR_RS10600 0.44 +3.1
2,226,206 - AZOBR_RS10600 0.44 -0.5
2,226,206 - AZOBR_RS10600 0.44 +0.3
2,226,550 + AZOBR_RS10600 0.68 -0.2
2,226,673 + AZOBR_RS10600 0.77 +0.1
2,226,716 - AZOBR_RS10600 0.80 +0.7
2,226,787 + AZOBR_RS10600 0.85 +0.5
2,226,787 + AZOBR_RS10600 0.85 +0.4
2,227,457 - AZOBR_RS10605 0.78 -0.5
2,227,457 - AZOBR_RS10605 0.78 -0.6
2,227,568 - -0.6
2,227,568 - +1.0
2,228,027 + AZOBR_RS10610 0.12 +0.2
2,228,028 - AZOBR_RS10610 0.12 +0.1
2,228,180 + AZOBR_RS10610 0.19 -1.2
2,228,180 + AZOBR_RS10610 0.19 +0.1
2,228,180 + AZOBR_RS10610 0.19 -2.4
2,228,181 - AZOBR_RS10610 0.19 +0.5
2,228,253 - AZOBR_RS10610 0.22 -1.1
2,228,426 + AZOBR_RS10610 0.31 -0.7
2,228,426 + AZOBR_RS10610 0.31 -1.9
2,228,427 - AZOBR_RS10610 0.31 -0.7

Or see this region's nucleotide sequence