Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09825

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09815 and AZOBR_RS09820 are separated by 31 nucleotidesAZOBR_RS09820 and AZOBR_RS09825 are separated by 65 nucleotidesAZOBR_RS09825 and AZOBR_RS09830 are separated by 137 nucleotides AZOBR_RS09815: AZOBR_RS09815 - hypothetical protein, at 2,057,727 to 2,058,185 _RS09815 AZOBR_RS09820: AZOBR_RS09820 - hypothetical protein, at 2,058,217 to 2,058,609 _RS09820 AZOBR_RS09825: AZOBR_RS09825 - hypothetical protein, at 2,058,675 to 2,058,899 _RS09825 AZOBR_RS09830: AZOBR_RS09830 - esterase, at 2,059,037 to 2,060,050 _RS09830 Position (kb) 2058 2059Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2058.366 kb on - strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.372 kb on - strand, within AZOBR_RS09820at 2058.393 kb on - strand, within AZOBR_RS09820at 2058.410 kb on + strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820at 2058.662 kb on - strandat 2058.662 kb on - strandat 2058.662 kb on - strandat 2058.784 kb on + strand, within AZOBR_RS09825at 2058.784 kb on + strand, within AZOBR_RS09825at 2058.785 kb on - strand, within AZOBR_RS09825at 2058.785 kb on - strand, within AZOBR_RS09825at 2059.126 kb on - strandat 2059.507 kb on - strand, within AZOBR_RS09830at 2059.560 kb on + strand, within AZOBR_RS09830at 2059.561 kb on - strand, within AZOBR_RS09830at 2059.561 kb on - strand, within AZOBR_RS09830

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,058,366 - AZOBR_RS09820 0.38 +0.3
2,058,371 + AZOBR_RS09820 0.39 +2.3
2,058,371 + AZOBR_RS09820 0.39 -0.0
2,058,371 + AZOBR_RS09820 0.39 -1.7
2,058,372 - AZOBR_RS09820 0.39 -0.9
2,058,393 - AZOBR_RS09820 0.45 +0.1
2,058,410 + AZOBR_RS09820 0.49 +1.3
2,058,411 - AZOBR_RS09820 0.49 -2.3
2,058,411 - AZOBR_RS09820 0.49 +1.7
2,058,662 - +0.8
2,058,662 - +0.4
2,058,662 - +0.3
2,058,784 + AZOBR_RS09825 0.48 +0.4
2,058,784 + AZOBR_RS09825 0.48 +2.2
2,058,785 - AZOBR_RS09825 0.49 -1.2
2,058,785 - AZOBR_RS09825 0.49 -2.9
2,059,126 - +0.3
2,059,507 - AZOBR_RS09830 0.46 -0.3
2,059,560 + AZOBR_RS09830 0.52 +0.7
2,059,561 - AZOBR_RS09830 0.52 -1.3
2,059,561 - AZOBR_RS09830 0.52 +0.7

Or see this region's nucleotide sequence