Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09810

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09800 and AZOBR_RS09805 are separated by 6 nucleotidesAZOBR_RS09805 and AZOBR_RS09810 overlap by 1 nucleotidesAZOBR_RS09810 and AZOBR_RS09815 are separated by 163 nucleotidesAZOBR_RS09815 and AZOBR_RS09820 are separated by 31 nucleotides AZOBR_RS09800: AZOBR_RS09800 - hypothetical protein, at 2,056,152 to 2,056,484 _RS09800 AZOBR_RS09805: AZOBR_RS09805 - peptide chain release factor I, at 2,056,491 to 2,056,910 _RS09805 AZOBR_RS09810: AZOBR_RS09810 - DSBA oxidoreductase, at 2,056,910 to 2,057,563 _RS09810 AZOBR_RS09815: AZOBR_RS09815 - hypothetical protein, at 2,057,727 to 2,058,185 _RS09815 AZOBR_RS09820: AZOBR_RS09820 - hypothetical protein, at 2,058,217 to 2,058,609 _RS09820 Position (kb) 2056 2057 2058Strain fitness (log2 ratio) -2 -1 0 1 2at 2056.018 kb on + strandat 2056.019 kb on - strandat 2056.040 kb on + strandat 2056.046 kb on + strandat 2056.047 kb on - strandat 2056.047 kb on - strandat 2056.225 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.363 kb on - strand, within AZOBR_RS09800at 2056.482 kb on + strandat 2056.483 kb on - strandat 2056.679 kb on - strand, within AZOBR_RS09805at 2057.022 kb on + strand, within AZOBR_RS09810at 2057.397 kb on + strand, within AZOBR_RS09810at 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.520 kb on + strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.521 kb on - strandat 2057.564 kb on - strandat 2057.564 kb on - strandat 2057.572 kb on + strandat 2058.366 kb on - strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.371 kb on + strand, within AZOBR_RS09820at 2058.372 kb on - strand, within AZOBR_RS09820at 2058.393 kb on - strand, within AZOBR_RS09820at 2058.410 kb on + strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820at 2058.411 kb on - strand, within AZOBR_RS09820

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,056,018 + +0.6
2,056,019 - -1.7
2,056,040 + -0.0
2,056,046 + +0.4
2,056,047 - -1.4
2,056,047 - +1.0
2,056,225 - AZOBR_RS09800 0.22 +1.3
2,056,363 - AZOBR_RS09800 0.63 +1.2
2,056,363 - AZOBR_RS09800 0.63 +0.7
2,056,482 + +0.9
2,056,483 - -0.6
2,056,679 - AZOBR_RS09805 0.45 -0.2
2,057,022 + AZOBR_RS09810 0.17 -0.6
2,057,397 + AZOBR_RS09810 0.74 -1.7
2,057,520 + -1.0
2,057,520 + -1.4
2,057,520 + -1.9
2,057,520 + -1.2
2,057,521 - -0.9
2,057,521 - +0.7
2,057,521 - +1.4
2,057,564 - -0.4
2,057,564 - -2.4
2,057,572 + -1.1
2,058,366 - AZOBR_RS09820 0.38 +0.3
2,058,371 + AZOBR_RS09820 0.39 +2.3
2,058,371 + AZOBR_RS09820 0.39 -0.0
2,058,371 + AZOBR_RS09820 0.39 -1.7
2,058,372 - AZOBR_RS09820 0.39 -0.9
2,058,393 - AZOBR_RS09820 0.45 +0.1
2,058,410 + AZOBR_RS09820 0.49 +1.3
2,058,411 - AZOBR_RS09820 0.49 -2.3
2,058,411 - AZOBR_RS09820 0.49 +1.7

Or see this region's nucleotide sequence