Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09580 and AZOBR_RS09585 are separated by 519 nucleotides AZOBR_RS09585 and AZOBR_RS09590 are separated by 119 nucleotides AZOBR_RS09590 and AZOBR_RS09595 are separated by 92 nucleotides
AZOBR_RS09580: AZOBR_RS09580 - exported protein of unknown function, at 2,008,560 to 2,009,315
_RS09580
AZOBR_RS09585: AZOBR_RS09585 - hypothetical protein, at 2,009,835 to 2,010,989
_RS09585
AZOBR_RS09590: AZOBR_RS09590 - putative Zn-ribbon-containing protein involved in phosphonate metabolism PhnA-like protein, at 2,011,109 to 2,011,465
_RS09590
AZOBR_RS09595: AZOBR_RS09595 - C4-dicarboxylate ABC transporter permease, at 2,011,558 to 2,012,856
_RS09595
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2008.953 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.236 kb on - strand, within AZOBR_RS09580 at 2009.313 kb on + strand at 2009.499 kb on + strand at 2009.500 kb on - strand at 2009.925 kb on + strand at 2009.926 kb on - strand at 2009.926 kb on - strand at 2009.926 kb on - strand at 2010.001 kb on - strand, within AZOBR_RS09585 at 2011.078 kb on + strand at 2011.154 kb on + strand, within AZOBR_RS09590 at 2011.155 kb on - strand, within AZOBR_RS09590 at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.607 kb on + strand at 2011.608 kb on - strand at 2011.608 kb on - strand at 2011.608 kb on - strand at 2011.707 kb on - strand, within AZOBR_RS09595
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 2,008,953 + AZOBR_RS09580 0.52 -0.6 2,009,235 + AZOBR_RS09580 0.89 -1.7 2,009,235 + AZOBR_RS09580 0.89 -0.1 2,009,235 + AZOBR_RS09580 0.89 -2.1 2,009,236 - AZOBR_RS09580 0.89 +1.2 2,009,313 + +0.2 2,009,499 + +1.1 2,009,500 - +1.6 2,009,925 + -1.0 2,009,926 - -0.5 2,009,926 - +0.7 2,009,926 - +0.1 2,010,001 - AZOBR_RS09585 0.14 -0.7 2,011,078 + -0.0 2,011,154 + AZOBR_RS09590 0.13 +0.8 2,011,155 - AZOBR_RS09590 0.13 +0.9 2,011,559 + -2.7 2,011,559 + +1.4 2,011,559 + -0.3 2,011,559 + +0.8 2,011,559 + -0.8 2,011,559 + -0.9 2,011,559 + +3.0 2,011,560 - +0.3 2,011,560 - +0.5 2,011,560 - +0.9 2,011,560 - +0.7 2,011,560 - +0.5 2,011,560 - +1.2 2,011,607 + -0.0 2,011,608 - +0.4 2,011,608 - -0.8 2,011,608 - +1.3 2,011,707 - AZOBR_RS09595 0.11 +0.6
Or see this region's nucleotide sequence