Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09585

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09580 and AZOBR_RS09585 are separated by 519 nucleotidesAZOBR_RS09585 and AZOBR_RS09590 are separated by 119 nucleotidesAZOBR_RS09590 and AZOBR_RS09595 are separated by 92 nucleotides AZOBR_RS09580: AZOBR_RS09580 - exported protein of unknown function, at 2,008,560 to 2,009,315 _RS09580 AZOBR_RS09585: AZOBR_RS09585 - hypothetical protein, at 2,009,835 to 2,010,989 _RS09585 AZOBR_RS09590: AZOBR_RS09590 - putative Zn-ribbon-containing protein involved in phosphonate metabolism PhnA-like protein, at 2,011,109 to 2,011,465 _RS09590 AZOBR_RS09595: AZOBR_RS09595 - C4-dicarboxylate ABC transporter permease, at 2,011,558 to 2,012,856 _RS09595 Position (kb) 2009 2010 2011Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2008.953 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.236 kb on - strand, within AZOBR_RS09580at 2009.313 kb on + strandat 2009.499 kb on + strandat 2009.500 kb on - strandat 2009.925 kb on + strandat 2009.926 kb on - strandat 2009.926 kb on - strandat 2009.926 kb on - strandat 2010.001 kb on - strand, within AZOBR_RS09585at 2011.078 kb on + strandat 2011.154 kb on + strand, within AZOBR_RS09590at 2011.155 kb on - strand, within AZOBR_RS09590at 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.559 kb on + strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.560 kb on - strandat 2011.607 kb on + strandat 2011.608 kb on - strandat 2011.608 kb on - strandat 2011.608 kb on - strandat 2011.707 kb on - strand, within AZOBR_RS09595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,008,953 + AZOBR_RS09580 0.52 -0.6
2,009,235 + AZOBR_RS09580 0.89 -1.7
2,009,235 + AZOBR_RS09580 0.89 -0.1
2,009,235 + AZOBR_RS09580 0.89 -2.1
2,009,236 - AZOBR_RS09580 0.89 +1.2
2,009,313 + +0.2
2,009,499 + +1.1
2,009,500 - +1.6
2,009,925 + -1.0
2,009,926 - -0.5
2,009,926 - +0.7
2,009,926 - +0.1
2,010,001 - AZOBR_RS09585 0.14 -0.7
2,011,078 + -0.0
2,011,154 + AZOBR_RS09590 0.13 +0.8
2,011,155 - AZOBR_RS09590 0.13 +0.9
2,011,559 + -2.7
2,011,559 + +1.4
2,011,559 + -0.3
2,011,559 + +0.8
2,011,559 + -0.8
2,011,559 + -0.9
2,011,559 + +3.0
2,011,560 - +0.3
2,011,560 - +0.5
2,011,560 - +0.9
2,011,560 - +0.7
2,011,560 - +0.5
2,011,560 - +1.2
2,011,607 + -0.0
2,011,608 - +0.4
2,011,608 - -0.8
2,011,608 - +1.3
2,011,707 - AZOBR_RS09595 0.11 +0.6

Or see this region's nucleotide sequence