Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09580

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09575 and AZOBR_RS09580 are separated by 223 nucleotidesAZOBR_RS09580 and AZOBR_RS09585 are separated by 519 nucleotides AZOBR_RS09575: AZOBR_RS09575 - dehydrogenase, at 2,006,285 to 2,008,336 _RS09575 AZOBR_RS09580: AZOBR_RS09580 - exported protein of unknown function, at 2,008,560 to 2,009,315 _RS09580 AZOBR_RS09585: AZOBR_RS09585 - hypothetical protein, at 2,009,835 to 2,010,989 _RS09585 Position (kb) 2008 2009 2010Strain fitness (log2 ratio) -2 -1 0 1at 2007.594 kb on + strand, within AZOBR_RS09575at 2007.606 kb on + strand, within AZOBR_RS09575at 2007.942 kb on + strand, within AZOBR_RS09575at 2007.943 kb on - strand, within AZOBR_RS09575at 2007.943 kb on - strand, within AZOBR_RS09575at 2008.215 kb on + strandat 2008.216 kb on - strandat 2008.375 kb on + strandat 2008.375 kb on + strandat 2008.376 kb on - strandat 2008.704 kb on + strand, within AZOBR_RS09580at 2008.803 kb on + strand, within AZOBR_RS09580at 2008.804 kb on - strand, within AZOBR_RS09580at 2008.804 kb on - strand, within AZOBR_RS09580at 2008.953 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.235 kb on + strand, within AZOBR_RS09580at 2009.236 kb on - strand, within AZOBR_RS09580at 2009.313 kb on + strandat 2009.499 kb on + strandat 2009.500 kb on - strandat 2009.925 kb on + strandat 2009.926 kb on - strandat 2009.926 kb on - strandat 2009.926 kb on - strandat 2010.001 kb on - strand, within AZOBR_RS09585

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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2,007,594 + AZOBR_RS09575 0.64 -0.1
2,007,606 + AZOBR_RS09575 0.64 +0.7
2,007,942 + AZOBR_RS09575 0.81 -2.3
2,007,943 - AZOBR_RS09575 0.81 -1.0
2,007,943 - AZOBR_RS09575 0.81 -1.3
2,008,215 + +1.2
2,008,216 - -0.3
2,008,375 + +0.7
2,008,375 + -0.3
2,008,376 - -1.6
2,008,704 + AZOBR_RS09580 0.19 -1.0
2,008,803 + AZOBR_RS09580 0.32 +1.2
2,008,804 - AZOBR_RS09580 0.32 +0.8
2,008,804 - AZOBR_RS09580 0.32 -0.0
2,008,953 + AZOBR_RS09580 0.52 -0.6
2,009,235 + AZOBR_RS09580 0.89 -1.7
2,009,235 + AZOBR_RS09580 0.89 -0.1
2,009,235 + AZOBR_RS09580 0.89 -2.1
2,009,236 - AZOBR_RS09580 0.89 +1.2
2,009,313 + +0.2
2,009,499 + +1.1
2,009,500 - +1.6
2,009,925 + -1.0
2,009,926 - -0.5
2,009,926 - +0.7
2,009,926 - +0.1
2,010,001 - AZOBR_RS09585 0.14 -0.7

Or see this region's nucleotide sequence