Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08455

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08445 and AZOBR_RS08450 are separated by 63 nucleotidesAZOBR_RS08450 and AZOBR_RS08455 are separated by 25 nucleotidesAZOBR_RS08455 and AZOBR_RS08460 are separated by 227 nucleotides AZOBR_RS08445: AZOBR_RS08445 - delta-aminolevulinic acid dehydratase, at 1,773,048 to 1,774,061 _RS08445 AZOBR_RS08450: AZOBR_RS08450 - 3' 5'-cyclic-nucleotide phosphodiesterase, at 1,774,125 to 1,774,973 _RS08450 AZOBR_RS08455: AZOBR_RS08455 - diacylglycerol kinase, at 1,774,999 to 1,775,919 _RS08455 AZOBR_RS08460: AZOBR_RS08460 - enoyl-CoA hydratase, at 1,776,147 to 1,777,223 _RS08460 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1at 1774.104 kb on - strandat 1774.288 kb on + strand, within AZOBR_RS08450at 1774.289 kb on - strand, within AZOBR_RS08450at 1774.394 kb on - strand, within AZOBR_RS08450at 1774.700 kb on - strand, within AZOBR_RS08450at 1774.708 kb on + strand, within AZOBR_RS08450at 1774.709 kb on - strand, within AZOBR_RS08450at 1774.709 kb on - strand, within AZOBR_RS08450at 1774.709 kb on - strand, within AZOBR_RS08450at 1774.709 kb on - strand, within AZOBR_RS08450at 1774.747 kb on + strand, within AZOBR_RS08450at 1774.747 kb on + strand, within AZOBR_RS08450at 1774.748 kb on - strand, within AZOBR_RS08450at 1775.079 kb on - strandat 1775.079 kb on - strandat 1775.079 kb on - strandat 1775.264 kb on + strand, within AZOBR_RS08455at 1775.264 kb on + strand, within AZOBR_RS08455at 1775.264 kb on + strand, within AZOBR_RS08455at 1775.265 kb on - strand, within AZOBR_RS08455at 1775.265 kb on - strand, within AZOBR_RS08455at 1775.265 kb on - strand, within AZOBR_RS08455at 1775.265 kb on - strand, within AZOBR_RS08455at 1775.265 kb on - strand, within AZOBR_RS08455at 1775.603 kb on + strand, within AZOBR_RS08455at 1775.604 kb on - strand, within AZOBR_RS08455at 1775.869 kb on - strandat 1776.086 kb on + strandat 1776.087 kb on - strandat 1776.379 kb on - strand, within AZOBR_RS08460at 1776.450 kb on + strand, within AZOBR_RS08460at 1776.451 kb on - strand, within AZOBR_RS08460at 1776.489 kb on + strand, within AZOBR_RS08460at 1776.489 kb on + strand, within AZOBR_RS08460at 1776.489 kb on + strand, within AZOBR_RS08460at 1776.489 kb on + strand, within AZOBR_RS08460at 1776.610 kb on - strand, within AZOBR_RS08460at 1776.631 kb on - strand, within AZOBR_RS08460at 1776.631 kb on - strand, within AZOBR_RS08460

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,774,104 - -0.2
1,774,288 + AZOBR_RS08450 0.19 -1.3
1,774,289 - AZOBR_RS08450 0.19 +0.9
1,774,394 - AZOBR_RS08450 0.32 -2.1
1,774,700 - AZOBR_RS08450 0.68 -0.2
1,774,708 + AZOBR_RS08450 0.69 +1.5
1,774,709 - AZOBR_RS08450 0.69 -2.3
1,774,709 - AZOBR_RS08450 0.69 -0.9
1,774,709 - AZOBR_RS08450 0.69 +0.7
1,774,709 - AZOBR_RS08450 0.69 -0.5
1,774,747 + AZOBR_RS08450 0.73 +0.4
1,774,747 + AZOBR_RS08450 0.73 -0.9
1,774,748 - AZOBR_RS08450 0.73 +0.6
1,775,079 - +0.8
1,775,079 - -0.4
1,775,079 - +0.9
1,775,264 + AZOBR_RS08455 0.29 -0.3
1,775,264 + AZOBR_RS08455 0.29 +0.2
1,775,264 + AZOBR_RS08455 0.29 -1.2
1,775,265 - AZOBR_RS08455 0.29 -0.8
1,775,265 - AZOBR_RS08455 0.29 +0.4
1,775,265 - AZOBR_RS08455 0.29 -2.3
1,775,265 - AZOBR_RS08455 0.29 +0.8
1,775,265 - AZOBR_RS08455 0.29 -1.1
1,775,603 + AZOBR_RS08455 0.66 +1.0
1,775,604 - AZOBR_RS08455 0.66 +0.3
1,775,869 - +0.8
1,776,086 + -0.5
1,776,087 - +0.8
1,776,379 - AZOBR_RS08460 0.22 -0.2
1,776,450 + AZOBR_RS08460 0.28 +1.7
1,776,451 - AZOBR_RS08460 0.28 +0.1
1,776,489 + AZOBR_RS08460 0.32 -2.6
1,776,489 + AZOBR_RS08460 0.32 +0.1
1,776,489 + AZOBR_RS08460 0.32 +0.6
1,776,489 + AZOBR_RS08460 0.32 +0.9
1,776,610 - AZOBR_RS08460 0.43 +1.3
1,776,631 - AZOBR_RS08460 0.45 +0.4
1,776,631 - AZOBR_RS08460 0.45 -0.6

Or see this region's nucleotide sequence